Salvia hispanica (chia): 125205897
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Entry
125205897 CDS
T09851
Name
(RefSeq) DNA polymerase zeta catalytic subunit isoform X1
KO
K02350
DNA polymerase zeta [EC:
2.7.7.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
125205897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shis03400
]
125205897
Enzymes [BR:
shis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
125205897
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
B-family DNA polymerases
125205897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
POL3_N
REV3_N
DNA_pol_B_exo1
zf-C4pol
DZR_2
Motif
Other DBs
NCBI-GeneID:
125205897
NCBI-ProteinID:
XP_047961033
LinkDB
All DBs
Position
2:complement(9390824..9399687)
Genome browser
AA seq
1958 aa
AA seq
DB search
MGSSQPQLFSVRIVSIDYYMSPPIPDFDISYSNFHGGKVNEVPVIRIYGSTPAGQKTCLH
IHQVLPYLYVPISDLGPITNDEADSSMHSVSLSLEKALKLKGNTGSKRQHVHGCNLVRAK
KFYGYHSSEELFVKIYFYHPQDVSRAANLLLVGAVLDKNLQPYESHIPFLLQFLIDYNLY
GMGHLHVSKMKFRHPVPDVYSHQKLKYSSKLRTSRDDTTCMDFQADSGGDLSLATPVWIS
STIPDGWIWKFSNQLSSSAGEVYPVFRRQSTSELEADAVAHDIVNQQFISYVSMSQTPSN
TKVVQSLIPIWEEEHAANGVTEVTLLDPEKPLPRDVLRDLLGGAEFEKFIEVLDDSDNCS
LLTPESVKSSAVCGDFLDPAAANLEESSYLPSNYLKAVEKDGPLISLSSSLQKFVAAETN
ETDAAKQLQLSANVEPSTAKDEDALRLLKWLASSQASEDINSDDELTRETILSPLLPSKD
IDKVLERANVDYESESQKECQDILDSVDMINNEDQDSIPFQSAEYNDPVKHLWSRVIPQV
DGSSDDPPSTPCSGESPKTEYSEAKSNVETQSWSRIASNLRNKHLNKRPQWGSLPVCCQK
VSDFSPPSVKEDLGTSLTGNVSDKLPSVKVDKKKDICHSGKASVIAECSTRDLMRRKRSC
RVEPVDHRSPVGVRDAKLCSGSDCASRDVYLASRSRSCDENKKALTSRTKSHESNINSSV
EVCSEAIHINPSCSPVLGELHGSSCEDGIDAENLLKKGNTKCVNPNYSCSGENLHSTVDS
NMNVDESEQAHVSTKKTFGKVLGRTMQLTDIVESCTVPSNSAASETTYNTDCTSERYPTS
VSIHKLHNVPTENLKGMERETTDMQFEKLPYFGKGPGMDEAYDSSKDIDQEAETVKLTAM
TIPKKPPTIDWKDEGKTEAPLSLQGGSANDLQPFFERNFLEDEQLPCVSPRKSGLVDNHE
AVMGVPVLYQNDGSYLYMLTPAMSPPSRQSVDRWLLSDCSDISRHKMDSPPQFLPISDLV
EERDSQATDRSIMPESAFMSMCDKRPERTQPPEHNQEIKRKLETSCSLDTSQISGPDKKM
RFTPLSQIGFRDPASAGEGQQLTLLSVEVQAESRGELRPDPRFDGINAIILIFQEDNASM
SDTYVLLRCDSANLEKDLDAVSESKTCVFQEESQLLNHFTKLIHDFDPDILMGWDVQSSS
LGFLAERAAHLGIGLLNNISRTPSRINISSADSRASDKEKDSKSVTGEVVHLENSIIEDE
WGRTHASGVHVSGRIVLNVWRLMRNEVKLNMYTVEAVAETVLRRKIPYIPWKVLTRWFAS
GPGRARYRSIDHTSERAKLNLQILNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMF
LRLAHTQNYLAISPGTQQVASQPAMECIPLVMEPESRFYADPVVVLDFQSLYPSMVIGYN
LCFCTCLGKITPPMTHGLGVCAYSPQLNTLRNSKQELLVAPNGVAYVPSKVRRGILPRLL
EEILSTRIMVKQAMKKLDPSQLVRHRILNARQLALKLIANVTYGYTAAGFSGRMPCAELA
DSIVQCGRRTLETAISFVNSNDKWKAKVIYGDTDSMFVLLKGRSVQEAFAIGREIASAIT
KMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQSKPIFDAKGIETVRRDTCAAVSKT
MEQSLRIYFESQDIYKVKAYVLRQWTKILSGRVSIQDFVFAKEVRLGTYAERAYSLPPAA
IVATKSLRKDPRAEPRYAERIPYVVIHGEPGARLMDMVVDPLELLAINSPFRLNDIYYIR
KQIMPALQRVFGLVGADLNQWFLDTPRPVRETAGKRQTVAQNPQRMRIDYYYASQHCTIC
GEVVQGSAHLCHVCSKNETTVAIALAGRTSKLEKNIQHLTAICRHCGGGDWVVESGVKCT
SLACSVFYERMKVQKELQSLSEVATATGFYPKCMVEWF
NT seq
5877 nt
NT seq
+upstream
nt +downstream
nt
atggggagttcgcagccccaattgttcagcgtcagaatagtttcaatcgactattacatg
tcgcctccgattcccgacttcgacatttcttatagcaatttccacggtgggaaggtgaac
gaggttccagtgataaggatatacggttcaactccggctggtcagaagacttgtttgcac
attcatcaagttttaccttatctgtatgttcctatttctgatctggggcctataacaaat
gatgaagctgattcaagcatgcattctgtatctctttcccttgagaaggccctgaagctt
aaaggaaatactggctcaaaacgtcaacatgtacatggctgcaatcttgttcgtgcaaag
aagttctatggttatcattcttcagaggagctctttgtgaagatatatttctaccatcca
caggatgtttctcgtgctgcaaatcttcttctggtgggtgctgtactagataaaaactta
cagccatatgaatcacatataccttttcttctgcagttcttgattgactataatttatat
ggaatgggccatttacacgtttctaagatgaagtttcgccatcctgttccagatgtttac
tcacaccagaaactcaaatacagtagtaaactgagaacgtcaagagatgacaccacttgc
atggattttcaggcagattcaggtggtgatttatctttggctactccggtatggatttct
tctactattcctgatgggtggatatggaaattttcaaatcaactcagttcttcagcaggt
gaagtttatccagtgttcaggcgccagagtacctctgaactggaagcagatgctgtagca
catgatatcgtaaatcaacagtttatatcatatgtctctatgtctcaaactccttccaac
acgaaagtggttcagtcgctaataccaatatgggaggaagaacatgcggcgaatggggta
actgaagtcacgcttcttgatccagagaaaccattaccacgagatgttttaagggatcta
ttaggtggggctgagtttgagaaatttattgaagtgttagatgattcagataactgctca
cttttgactccagagtcagtcaagtcttcagcagtttgtggagattttctcgaccctgcg
gctgctaaccttgaagaaagcagttatttgccatccaattatttaaaggcggttgaaaag
gatggacctcttatatcattaagttcatcattacagaaatttgttgcagcagaaactaat
gagactgatgcagctaaacaactgcaactatctgccaatgtggaaccgtcaactgcaaag
gatgaagatgccttaaggcttttaaagtggcttgcatcttctcaggcttcagaagatatc
aactcagatgatgaactcactcgtgagacaattttaagtcccttacttccttcaaaagac
attgacaaggtgttagagagagccaatgtagattatgagagtgaatctcaaaaagagtgt
caagatattcttgattctgttgatatgattaataatgaagaccaggactccatacccttc
cagtctgccgagtacaatgatcctgtcaaacatttgtggagtagggttattccgcaagtg
gatggatccagtgacgatccaccatcaactccatgctcaggcgagtcacccaaaacagaa
tatagtgaagcaaagtcaaatgttgaaacgcaatcatggtctagaatagcctcaaacttg
agaaataagcatctaaataaaagacctcaatggggttctttacctgtttgttgtcagaaa
gtaagtgatttttcacctcccagtgtaaaagaagatttgggaacttctttgactggaaat
gtatcagataaacttccatctgtaaaagttgataagaagaaagatatatgtcactctggg
aaagctagtgtaatagctgaatgctccacacgggatttgatgagaaggaaacgatcttgt
cgagttgaacccgttgatcataggagcccagtgggagtccgggatgcaaaattatgctct
ggttctgattgtgcaagcagagacgtataccttgcctcaagatcaaggagttgtgatgaa
aacaaaaaggcacttacttcacggacaaagtcccatgaaagtaatataaattcaagtgtt
gaggtctgcagtgaggctattcatataaacccgtcttgttcccctgttttaggtgaattg
catggatcatcttgtgaggatggtatagatgcagaaaatctactgaaaaaagggaacact
aagtgtgttaatcctaactacagctgttctggtgagaatttgcacagcactgttgatagt
aatatgaatgttgacgaatctgaacaggctcatgtttcaactaagaagacttttggtaaa
gttttaggtcgcacaatgcagctaactgatattgtggaatcatgtactgtcccttcaaat
tcagctgcaagtgagaccacatacaacactgattgcacaagcgaaagatatccaacctca
gtctctatccacaagttgcacaatgttccaactgagaatttgaagggcatggaaagggag
acaacagacatgcagtttgaaaagttaccatattttggaaaaggtcctggtatggatgaa
gcttatgactcatcaaaagacatagaccaggaagctgaaactgtaaaacttactgctatg
accattcccaagaaacctccaactatagattggaaagatgagggcaaaactgaagctcct
ttgtctcttcagggaggatctgcaaatgatttgcagcctttctttgagaggaatttcctg
gaagacgaacaacttccatgtgttagccctagaaaaagtgggcttgtcgataaccatgaa
gcagtaatgggtgttcctgttctttaccagaatgatgggtcatatttatacatgctgact
cctgcaatgtcacctccatcgaggcaatctgttgatagatggctgttatctgattgctct
gacatttccaggcacaagatggactcaccaccgcaatttcttccgatatctgatttggtg
gaagaacgagattctcaggctactgacaggtccatcatgcctgagtctgcttttatgtcc
atgtgcgacaaaaggccagagcgaactcaaccaccagagcataatcaagagattaagagg
aaactagaaaccagctgctcactagatacctctcagatatctggtcctgataaaaagatg
aggttcactccattaagtcagattggttttcgagacccagcaagtgcgggtgaaggacag
cagctaacattacttagtgtggaggtgcaggctgagtctagaggggagttaagaccggat
cctcgctttgatggcatcaatgctatcattcttatttttcaagaggacaatgcatctatg
tccgatacttatgttcttctgcgatgtgattctgctaatctggaaaaggatcttgatgca
gtttcggagtccaagacatgtgtttttcaggaagaatcacaattgcttaatcatttcacg
aagctaatccatgattttgaccctgatattcttatgggctgggatgttcaaagcagttcc
cttgggtttttggctgaaagggcagcacatcttggcattggtttgctgaataatatatcg
aggacgccatctcgaatcaatatatcttctgcagattctagggcttctgacaaagaaaaa
gattccaaatctgttactggtgaagtagttcatctagagaactccataattgaggacgag
tggggccggacgcatgccagtggtgttcatgttagtggtagaattgtgctcaatgtatgg
agactaatgcgtaatgaagtgaagctaaatatgtacacagttgaagctgttgctgagaca
gtgctgaggcgaaaaattccatacatcccttggaaagtgctaacaagatggtttgctagt
ggccctggacgagcaaggtatagatctattgatcatacaagtgagagagcaaagttgaat
ttacagattctgaatcagctcgacatgataaatcgaacatcagaacttgctagagtattt
ggtattgacttcttttcagtactatctcgaggctcacagtatcgtgttgaatcaatgttt
ttgcgtttagctcacacacagaactatcttgccatttcccccggaacccaacaggtggct
agtcaaccggcaatggaatgtataccgcttgttatggagccagaatcaaggttttatgca
gatcctgtcgttgttttggattttcagtctctttatccgtcgatggtaattggatataac
ctctgcttttgtacatgtctgggaaagatcacacctccaatgacacatggacttggcgtc
tgtgcatattcaccacaattaaatacgttacgcaattcgaagcaagagttactggtagca
ccaaatggtgtcgcctatgttccatcaaaggtacggagaggtatactacctaggctgttg
gaagagatactatcaaccagaatcatggtgaaacaagcaatgaaaaagttagatccgtct
cagcttgttcgacacaggatattaaatgctcgacagcttgctttaaagcttatagcaaat
gtcacctatggctatacagctgctgggtttagtggacgcatgccttgtgctgaacttgcg
gatagtatcgtgcagtgtggccgtagaactttggaaactgcaatctctttcgtaaactca
aatgacaagtggaaagcgaaagttatttacggtgatacagatagcatgttcgtgctcctt
aaagggcggtctgttcaagaagcgtttgcgattggacgagaaattgcatctgcaataacc
aaaatgaatcccagtcctgtcacattgaaaatggaaaaggtttatcacccctgcttcctc
cttacaaagaagcgatatgttggttacagctacgagagtcccgatcagagcaagccgatc
tttgatgctaagggtattgagacagttcgaagagatacatgtgctgctgtatccaaaacc
atggagcagtcattgaggatctatttcgaaagccaggatatatataaggtaaaagcttac
gtgctgcgccagtggacgaagatattatctggcagggtctccattcaggactttgttttt
gcaaaggaggttcgcttgggcacgtacgctgaacgtgcttattcacttcctccggctgca
attgtggccaccaaatcactgcgcaaagaccctcgggcagagcctcggtatgctgagcgg
ataccttacgttgtgatccatggtgagcccggtgctcgtctaatggacatggtggtcgac
ccgcttgaacttctagccatcaattcccctttcagactaaatgatatctattacattagg
aaacaaatcatgcctgctttgcagagagtgtttgggctggttggagctgatctgaaccag
tggttcctggacacaccccgcccggtgcgcgaaactgctgggaaacgccagactgttgcg
cagaatccacagaggatgagaattgattattactatgcatcgcagcattgtactatctgt
ggagaggtggttcagggatcagctcatctctgccatgtctgttccaagaatgaaacaact
gttgctatagccttggcgggaagaacttcgaaactcgaaaagaatatccaacaccttact
gctatatgtcgtcattgtggagggggggattgggttgttgaaagtggagtgaaatgtact
tcgttagcgtgctcagttttctatgagagaatgaaagttcagaaagaattgcagtcactg
tctgaagtagctacagcgactggtttctacccaaaatgcatggtagagtggttctaa
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integrated database retrieval system
