Salvia hispanica (chia): 125206805
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Entry
125206805 CDS
T09851
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125206805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125206805
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125206805
Spliceosome [BR:
shis03041
]
Complex C
Other components
Step II factors
125206805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_22
T2SSE
nSTAND3
AAA_19
AAA_30
Sigma54_activ_2
ABC_tran
ATPase
AAA_16
DEAD
AAA_7
TsaE
SRP54
PhoH
NB-ARC
Motif
Other DBs
NCBI-GeneID:
125206805
NCBI-ProteinID:
XP_047961984
LinkDB
All DBs
Position
2:31690305..31696870
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AA seq
727 aa
AA seq
DB search
MEGNGKDKEYDLDKITDTLAPEDSTVGGLLVPGKDRVVFRPLKKSVLGLDMLANAKRMES
KVDGSFKKPKERVASIASSLDEGEDLPASSGITDVENVTSSNLRSYSNRKYRESASNETS
NLGSVVTGEANAVEASPRHHSDRHMNVRTESVESSRSRSPSSDYARSDRDRSKYDGHYRS
SDREGRTPRDRYGSDREGRTPRDRYGSDREGRTPRDRYGYDREGMTPRESSRGQEKEHGG
DYGRKRGRYDRSMRTPGRSDWDDGRWEWEESPRRDGHNSSSRHYRPSPSPMLVGASPDAR
LVSPWLGGRTPNSSAASPWDSYAPSPTPIRASGVSLRSASSRYGGRSNQADPKDGETEPE
STSEDQNHEITESMRLEMEYNSDRAWYDREEGGTVYDADSSSAFLGDEASFQKKEAELAK
RLVRRDGTKMTLAQSKKLSQLTADNAQWEDRQLMRSGAVRGTEVQTEFDDEEERKVILLV
HDTKPPFLDGRIVFTKQAEPVMPLKDPTSDMAIISRKGSNLVREIREKQSMNKSRQRFWE
LAGSNLGNILGVEKTAEQVDADTAEVGEQGEIDFKQDAKFAQHLKKGEGVSDFAKSKTLA
QQRQYLPIFSIREELLQVIRENQVIVVVGETGSGKTTQLTQYLHEDGYTNNGIVGCTQPR
RVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTVIKYMTDGVLLRETLKDGGGDGE
FEEGTRG
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggagggaaacggaaaggacaaggaatatgatttggataagatcaccgatactctagct
ccagaagactctactgttggaggcctgcttgttccagggaaggatagagtggtttttaga
ccacttaaaaaatcagttttaggactagacatgcttgccaatgcaaagcgaatggagtca
aaggttgatggttcatttaaaaaaccaaaagaaagagttgcttccattgcttcatcacta
gacgaaggtgaggatttgcctgcttcttcaggaataactgatgtggagaatgtcacctct
agtaatttacggagttacagcaataggaaataccgtgaatcagcttcaaacgagacttct
aatttaggaagtgttgttactggagaagcaaatgcagttgaagcatccccccggcatcat
tcagatagacatatgaatgtgcgaactgaatctgttgaaagttcaaggagtaggagtcct
agttctgattatgccagaagtgatagagatcgaagtaaatatgatgggcactacagaagc
tctgacagggaagggaggacccctagagatagatatggctctgaccgggaagggaggacc
cctagagatagatatggctctgaccgggaagggaggacccctagggatagatatggctat
gacagggaagggatgaccccaagagagtcctctcgtggtcaagaaaaagaacatggtgga
gactatgggagaaaaagaggtagatacgacaggtccatgagaacacctggcaggtctgac
tgggatgatggaagatgggagtgggaagaatccccgcgtcgtgatggtcacaattctagc
agcagacattatcggccttctccatcccccatgcttgttggggcctcacctgatgctcgg
cttgtttctccatggttgggagggcgtactcctaattcttcagctgcatctccttgggat
agctatgctccttcccctactccaattcgggcatctggggtatctcttaggtctgcaagt
tcccgatatggtgggagatccaatcaggctgaccctaaggatggcgaaactgaaccagaa
agtacatctgaagaccagaatcatgagataacagaaagtatgcgtttagagatggaatac
aactctgatcgtgcatggtacgatcgagaagaaggcggcactgtttatgacgctgatagc
tcctctgcttttctcggtgacgaggcgtctttccagaaaaaagaagcagagttggctaag
aggctggtgagaagagatgggactaagatgactcttgcacagagcaaaaaactttcgcag
ctaactgctgataatgctcagtgggaggatagacaacttatgagatcaggtgctgtcaga
ggaactgaagtgcagacagagtttgatgatgaggaagaacgaaaggttattcttcttgtg
catgatacaaaacccccttttctcgatgggagaattgttttcacaaagcaagctgagcct
gttatgccattgaaagaccccacgtccgatatggctataatatcacggaagggctccaat
ctggtcagggaaattcgtgaaaaacaaagcatgaataagtccagacaacggttttgggag
cttgctggttctaatcttggcaatattcttggtgttgagaaaactgccgaacaggttgac
gcagatactgctgaagttggcgaacaaggtgaaattgatttcaaacaggatgcaaaattt
gcacaacatttaaaaaaaggagagggagtcagtgatttcgctaagtcaaaaacgttagcg
caacagcgacaatatttgcccatcttttctatacgagaagagttactgcaggtaatccgc
gaaaaccaagtgatcgtagtggttggtgaaactggttcaggaaagacaacacaactaaca
cagtatcttcacgaagatggatacacaaacaatggcattgttggttgcacacaaccaagg
cgtgtggccgccatgagtgttgcaaaaagagtcagtgaagagatggaaactgaacttggt
gataaagttggatatgccatacgttttgaggatgtcaccgggcctaacactgttattaag
tacatgactgacggtgtgttgctgagggagacactaaaagatggaggaggagatggagag
tttgaggaaggtacaagaggataa
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