Salvia hispanica (chia): 125206937
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Entry
125206937 CDS
T09851
Name
(RefSeq) LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 20-like
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shis03009
]
125206937
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
125206937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
RYDR_ITPR
HU-CCDC81_euk_1
SF0329
Motif
Other DBs
NCBI-GeneID:
125206937
NCBI-ProteinID:
XP_047962106
LinkDB
All DBs
Position
2:complement(37620293..37631385)
Genome browser
AA seq
2463 aa
AA seq
DB search
MKLLLLLQIFTSWSHIMMNLHKYLINDVCHILSITTKLRYYPKDYVRECMAESVSFLLRK
ASIEQLKRGVQELMAEVVEEPSEMRKSGVSVLLSHVMRITSSRLHSKAEILLPLLVDESI
FDIGGQWIKDSGPVLEVLILTFEKLLAELDPAELSFIWNCLSEKILESLTNKNSLHLTHL
LSLLTSIMQMDYLGKVTDSESLVKLVNQLVETFIARSPTMENIDLHSEVIEKVLQLMLCV
IGCLSDSKNMPALQLVSVQWESVFNIRSRSLLTFLGDLLMKDSSIYHVFGTNIMRAFTNL
IEIYDEEVMYLMMKFCEKLEEDSSSFWDGKSKEKLSRILVFFEETLHYWIGEISNSVDGI
LCPARQNKLAVLWAVIGCYSHLADVQENSSVLMELINAIDKLLIMESKADLQQDTWYCLL
GAALRSYNKLVSRRGITHEESAIIKFLDLAKRYKLSPRILSAVADILDSVSGASHRNCQF
YLSESTLDIFSENLSHPNREIRLSTLRILCHYEPVDSAENHPIENHSGIDDVETSLVDGC
HNNVLNLLRSVEETTLSIATSRKVILLISQLQTYLSDHRVADQYIVVALNGIFGILHNRF
SCFWSPALECLTVLVGRYFELVRNRYLSYLEQCQCDFLASQCQHYRGDNGYMEDTGLVGC
FRSDIICAFDSTPSATVLSLMIQSLQKVPLIAESHSQQIVPLFLKYLGYSVEAVTSVGSY
TTDHKGKEWKGVLKEWLSLFRLMPNPRSIYQGRFLRDVLVYRLLDQNDTDIQTKVLDCLL
NWNDVLLPYSENLKNLINAKNLRDELARWSVSRIAVDSVDERHRAYLVPIVIGILMPKVR
NLKMLGTQKNASVHHRKAVLGFLAELDLDELPLFFSLLVKPLLPVSQGGDEMSETCWASS
KTHQFEFDEPAILNLLTSNSVETLSWKKKSGFLHVVDDILAVFDEARIKPFLNVLINGVV
LISSSCTSALGNDNDEAEDENQGRNQIWEIRSLSLKVIYIVLSKYDDHNFGDAFWDVFFT
SVEPLVANFKKECLRSKKPPSTLFYCFLAMSKSHRLFPLLSKDENLVPEIFSMLSDPPAS
KTMLSCILKFTKNLLKLDKALDSEDFTVKSVLLPHLDEIIRGLHCIFTEENVTKRPLLEF
PGKREITIFNLLSVYVEEPSDAESFVNILLLFLAKKRLDSDTCVLLLKIIGQVVTVLGSE
ISENFLTSLSSLIISADIDVRIHICDVLDSVSSNDLSFLTMANILRDRSEASAEVMNGLE
TPAPSPYNEVNAEFYYTIEEKHAIPILSLAVHDMSSEDNTLRGNAYRLLIPFVELSGYIL
NGSLEPNQMWSRARIWFMVDNFLLKHMGNAMNKRGTCKKIWIELLKEMVLKLPGPKFDSY
RVLCSDDVEQDFFNNIVHKQKHRRARALARFSNFVGSGNLSKVITYKVFVPLLFSMLFDA
REASDENIVRACVGALASISGCMTWKKYSALLDRCFLNLARKPDRKKLFSRLICAILDNF
HFQESHESTPEIQETLRENIFPKVQKLLASDADRINVNVCLLALKLLKLLPSDIMDSHLS
TVVHRISNFLRNRLESVRDEARSALSACLKELGLEYLQFILNVLKGILKRGYELHVLGYT
LNFLLSKFHTSPICGEFDYCLDDLLFVVQNDILGSVSDEKEVEKIASKMKETRKHKSYET
LKLIAQSVTFKTHALKLLSPVTVNLHKQLNHKLKSKLENMLKHIAAGIESNPSVEKTELF
IFVNCLIKDGLIDEGNEHGCGFQPVENKRLVNVDRQFSHMITAFALEVLHSYLKKLKLSA
EDGQLLSLIDPFVSLLGQCLSSKHENIITAAFRCFTLIVRLPLPSLQQQADKIKTSLLVI
AQGAVNVNSQLTESCMKLLTTLLRTERVTLSNDQLHMLIQFPLFVDFEKRPSFVALSLLK
AIIHRKLVVPEIYDLVQTVEKMMVESQDEPIRKKCSQILLQFLLGYQLSQKRLQQHLDFL
LKNLWYEHSSGREAVLDMIYTIIVKFPQHVVDAQSQTLFPQLVLSLANNDDRNAKKMSAV
AIKCLIGRVSSHSLHSILENSLSWYLGGNQNLWGAAAQVLGLLVEVIRMNFQIHLSEVLP
AMRNILQSAANALASTQQDLSDVLVVPFWKEAYYSLVMLGKILTQFPSLFIDRELEDFWE
TICEFLLHPHLWLRNVSCQILSSYFAAVDNRDKSKFRAEAFYLMKPGILFRVAASLCCQL
KVPSNDDETGNVIKQNLEFSISALHYFLNNSEYTDVSGFWSSLDSSEQERFLKAFRILDP
RKGKRTLQSFISEAGGQHDKNQHPFISYFLQRMGKLTFQMEANQMKIVFDFYKAISPKLL
CEKSSPASFDDVRSFAYQLLLPLYRVCEGFTGKVISDELKEEAEEVRESIKGIIGEHSFV
QFYSQIYKNTKAKRDKRKQAEKVMAVVNPMRNAKRKRKIADKHQAHKKRKLMIMKMGRWM
HSD
NT seq
7392 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgctgttgttgctgcagatattcacatcatggtcacacataatgatgaacctg
cacaagtatcttataaacgatgtttgtcatattctaagtattacgacaaagttaagatac
tatcctaaggattatgttcgagaatgtatggctgagtcagtgtcgtttttgcttaggaaa
gcgtcaattgagcaactaaagagaggtgttcaggaacttatggctgaagttgttgaggaa
ccatcggaaatgaggaaatctggtgttagtgttctactatctcatgttatgagaatcacc
tcgtcaagattgcactcgaaagctgagatattgttgccacttctggttgatgaatctatc
ttcgatatcggtggccaatggattaaagattcaggaccggttctagaagtacttatcctg
acctttgagaaacttcttgcggagctagatccagccgaactttctttcatatggaattgc
ttgtcagaaaagatattagaatctttgacaaacaagaactctttacacctgactcatctt
ttgtccctgcttacttctattatgcaaatggattatcttgggaaagtcacagattctgaa
tccttagtcaaacttgtcaaccagctcgtggaaacttttattgctcgttctcctacaatg
gagaacatagacctacactctgaagttattgaaaaagttctgcaactcatgctttgtgta
attggttgtctctccgattctaagaatatgcctgctttacagctggtttctgtacagtgg
gagtcagtgttcaatataagaagtcgaagcttactgactttcctaggagatcttctcatg
aaggattccagtatttatcatgtctttggaacaaatataatgcgtgcgttcactaattta
atagaaatatatgatgaagaagtcatgtatttaatgatgaagttctgtgagaaactggaa
gaggatagctctagcttttgggatgggaaatccaaggagaagctttcaaggattttagtg
ttttttgaagagactcttcattactggattggagaaattagtaattctgttgatggaata
ttatgtcctgctcgacagaataagttggctgtcttatgggctgttattggctgctattcg
catttagcagatgtccaagaaaactcatctgtactaatggagttgataaatgcaatcgac
aagcttctgataatggaatctaaggcagacttacagcaagatacttggtattgcttactt
ggggctgcgttgcgttcttataacaagttggtgtctaggaggggtattactcatgaagag
tctgcaattattaagttcctggatcttgcaaaaagatataagctgtcgcctcgcatatta
tctgctgtagcagatatattggattcagtctctggtgcatcacataggaattgtcaattt
tatctttcagagtctactctagatatattctctgaaaatctgagtcatccgaatagagag
atccgcctttcaaccttgcgcatactgtgccattatgaacctgtggattcagctgagaat
catcctattgaaaatcattcaggaatcgatgatgttgagactagtctagttgatggctgc
cataacaatgttctcaacctactcagatctgttgaagagaccactctttcgatcgcaaca
agccgtaaagttattctcctaatttctcaactacagacgtatctgagtgatcatagagtt
gctgatcaatacatcgttgtcgcgttaaatggaatttttggcatacttcataaccggttt
agctgtttctggagtccagctttagagtgcctcactgtcctcgttggccgatattttgag
cttgtgaggaacagatatcttagctatcttgaacagtgtcagtgtgattttctagcatct
caatgtcaacattatagaggtgataatggctatatggaggacactggtttggttggatgc
ttcagatccgacatcatttgtgcatttgacagcactcccagcgcaacagtcttgtccctc
atgattcagtctttacagaaagttcctttaatagctgaatctcactctcagcaaatagta
cctctgtttcttaaatacctgggttacagtgttgaagcagtcactagtgttggatcatat
acaactgatcataaagggaaagaatggaagggagttcttaaagagtggttaagtttgttt
agattgatgccgaatcctaggtctatttatcaaggtcgatttctgagagatgtacttgtg
tataggcttctcgaccagaacgacactgatatacagacaaaagttcttgactgcttgctg
aactggaatgatgttttacttccatacagtgagaatctgaaaaatctaatcaatgcaaaa
aatctgcgagatgagcttgccaggtggagcgtatcgaggattgcggtggattctgttgat
gagcgacatagagcttatctcgtgcctatagtcatagggatactcatgccaaaagttaga
aacctgaagatgcttggcacccagaagaatgcaagtgtacatcatcgaaaggcagttctg
ggatttttagctgagcttgatcttgacgagcttcctcttttcttctcgctattagttaag
cctctgctgcctgtctctcaaggtggtgatgaaatgagcgaaacttgctgggcatcatcc
aaaactcatcaatttgagtttgatgaacctgctatcctgaatctcttaacatcaaattcc
gtagaaaccctatcgtggaagaagaaatctggtttcctgcatgttgttgacgatattttg
gcggtttttgatgaagcacgcattaagcctttccttaatgtactgattaacggcgttgtc
ctcatttcatcgagctgcacatcagctcttggcaatgataatgacgaagctgaggatgag
aaccaggggaggaatcaaatctgggagataaggtccttaagccttaaggtcatatatatt
gttcttagtaaatacgatgatcataattttggagatgcgttttgggatgtgttctttaca
tcagtagaacctttggttgctaattttaagaaggaatgtcttcgtagcaaaaagccgcca
agtacactgttctattgttttcttgcaatgagtaaaagccacagactttttccactgtta
tctaaggacgagaatctggtacccgaaattttctccatgctcagtgatccaccagcttca
aaaaccatgttgtcttgtatcttgaagttcactaagaacttgttgaagcttgataaagcc
ctggatagtgaagatttcacagtcaaaagtgttttacttcctcatcttgatgagatcatc
cgtggcttgcattgtattttcaccgaagaaaatgtgactaagaggcctttgctcgaattc
ccgggaaaaagagagatcactatcttcaacttgttgtcagtgtatgtggaggaaccatca
gatgctgaatcatttgttaatatattactcctatttcttgcaaagaaacgccttgattct
gatacttgcgtccttctattgaaaatcattggccaagtggtgactgtcctgggcagtgaa
attagtgaaaattttttgacttcactatcctcacttattatttcagctgatattgatgtt
cgtatccatatatgcgatgtccttgactctgtttcctccaatgacttatcttttttaaca
atggcaaacattcttcgtgatcgaagtgaagcctctgcagaggtgatgaatggtcttgag
actcctgccccatctccttataacgaggttaatgcggagttttattatactattgaggaa
aaacatgcaattccaatcctgagtctcgcagtacatgatatgtcatctgaagataacaca
ttacggggaaatgcatacagattactgatccccttcgttgaattgtctggctatatccta
aatggatctctagagcctaaccaaatgtggtctagagccagaatctggttcatggtagac
aattttttgttgaaacatatgggaaatgcaatgaacaagagaggcacttgtaaaaagata
tggattgagctccttaaggaaatggtgctgaagcttcccggaccaaaatttgattcgtac
agggtcttatgtagtgatgatgttgaacaagatttcttcaataacatagtacacaaacag
aaacacaggagagcaagagcactagctcgttttagcaactttgtcggttcaggcaatctg
tcgaaggtcatcacctataaagtgtttgtcccactgctctttagcatgctgtttgatgca
cgagaagcgagtgatgagaatattgtacgtgcatgtgttggtgccctggcatcaatttct
ggctgcatgacgtggaaaaagtacagcgccttgctagacagatgtttcctgaatttggca
cggaaaccagataggaaaaaacttttttcacgacttatctgtgctatcctcgataatttc
cattttcaggagtcccatgaatcgacacctgaaatacaggagacattgcgcgaaaacatt
ttccccaaggttcagaagttgttggcctctgatgctgaccgtatcaacgttaacgtctgc
ctgcttgcactgaaacttctaaaattgctccccagtgatatcatggattctcacctgtca
actgttgttcaccgtatttcaaacttcctaagaaatcggcttgaaagtgtacgtgatgag
gctaggtctgcgctgtcagcttgcttgaaggaactaggattggagtatttgcagttcatt
ctcaacgtcttgaagggcatactgaagagaggctatgaattacacgtgctaggatacacg
ctcaatttcttgctgtctaagttccacacgagtcccatctgcggagagttcgattactgc
ttggatgatctcctttttgttgtacagaatgatatacttgggagtgtttctgatgagaaa
gaggttgaaaagattgcttctaaaatgaaagagactagaaagcataaatcttatgaaact
ctaaagttgattgcccagagtgtcactttcaaaactcatgctttgaaacttctttcccct
gttacagttaatctgcacaagcagctcaaccacaagcttaagtcgaaattggagaacatg
ttaaaacacatagctgctggtattgaaagtaatccatctgtggagaagactgaactgttc
atatttgtgaattgcctcattaaagatggcctcatcgatgaaggtaatgaacacggatgt
ggtttccaaccagttgaaaacaaaagattagtgaatgtggaccggcaattttctcatatg
ataacagcgtttgcgcttgaagttctgcatagctacttgaagaaactgaagcttagcgca
gaggatggacagcttttatcattgattgatccttttgtaagtttattgggtcaatgtttg
agctccaaacatgaaaacattataacagctgcatttaggtgctttactctgatagtgcgg
ctgcctctgccatcgcttcagcagcaagctgacaagataaagacttctttgttggtcata
gcacaaggagcagttaatgtcaacagtcagttgactgagtcgtgtatgaagttgctaaca
acgcttctgcgaactgagagagtcacactttctaatgatcagttgcatatgctgatccag
tttccattgtttgttgattttgaaaaaagaccctcatttgtcgccctttcgctgttgaag
gctatcatacaccgaaagctggtagttcccgagatatatgatcttgtccagactgttgaa
aagatgatggtagaaagtcaagatgagcccattcgtaaaaagtgtagtcaaatcttgctt
cagtttttacttggttaccaactttctcagaagcgcttgcaacaacatcttgatttctta
ctgaaaaatttgtggtacgagcattccagtggaagggaagctgtcctcgatatgatctac
accattatcgtaaaatttccgcagcatgttgtggatgcacaatcgcaaacactgtttccg
cagttggtcctttcattggcgaataatgacgacagaaatgctaagaagatgtctgctgtt
gcaataaagtgtctcattgggcgtgttagctcgcattctcttcactcaatactcgagaat
agcttatcttggtaccttggaggaaatcagaacctatggggtgctgcagcacaggttttg
ggtttactagtggaagttattagaatgaattttcaaatacacctcagtgaagtacttcca
gcaatgagaaacattcttcagtctgctgccaatgctcttgcatcaactcaacaagattta
tcagacgtcttagtagttccgttctggaaggaggcatattattcgttggttatgttaggg
aagatcctaactcaatttcctagcttgttcattgacagggagctcgaggatttttgggaa
accatctgtgaattcctcttgcatcctcatttgtggttgcgtaacgtatcgtgccagatt
ctgtcttcttacttcgctgcagtggacaatcgagataagagcaaattcagagcagaagca
ttctatctcatgaaaccgggcatactcttccgagtagctgcttcattatgctgtcagctg
aaggtgccatcgaatgatgatgaaaccggcaacgttatcaagcaaaacctcgagttctca
atttccgcacttcattatttcttaaacaacagtgaatacacggatgtatctggcttctgg
tcaagccttgacagttccgagcaagaacgcttccttaaagctttccgtattcttgatcca
agaaaagggaagagaacgcttcaatcttttatttctgaggccggtgggcaacatgacaaa
aatcagcatccatttatttcatattttctccagagaatggggaagcttacctttcagatg
gaggccaatcagatgaaaattgtgttcgatttttacaaagcaatttcaccaaaactcctc
tgtgagaaatcttcacctgcaagctttgatgatgtccgtagttttgcgtatcagctgctg
ttgccgttgtacagagtctgcgaaggtttcaccgggaaagttatttcagatgagcttaaa
gaagaagcagaggaggtcagggaaagcataaaaggaatcatcggagagcatagttttgtt
caattttacagccaaatatacaaaaataccaaggcgaagcgcgacaaaaggaaacaagca
gagaaggtgatggctgttgtgaatccgatgcgcaatgccaagaggaagcgcaagatagct
gacaagcatcaagctcacaagaaaaggaaactgatgatcatgaaaatgggcagatggatg
cattcagattaa
DBGET
integrated database retrieval system
