Salvia hispanica (chia): 125207106
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Entry
125207106 CDS
T09851
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shis03009
]
125207106
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
125207106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
TPR_Trm732_C
RYDR_ITPR
Motif
Other DBs
NCBI-GeneID:
125207106
NCBI-ProteinID:
XP_047962279
LinkDB
All DBs
Position
2:complement(34234347..34250158)
Genome browser
AA seq
2649 aa
AA seq
DB search
MSTSIKSLKKCTGRRFIFKTFSQRVEEIDIDVYRSLDPLKAEPSEGSSFFRDCLIEYREL
NTARDFISFYEEFFPLVQTLPQIILHKKRIMKSLLSRLNMKGRLSLEPILRLISALSRDL
LDDFTEFLSKIIDSLKVLLKSGADKDPELIEQIFTSWSYIIMYLEKYLIKDVGDILSVMI
NLRYYPKDYVREFMAESVSYLLRKASIEQLKRGVQKLMAEVVEEPSVVRKSGVSALLSHA
MRIISSRLHSRAEILLPLLVDESIFAIDGQDFKDSRPVLEVLILTFERLCAELDPGEFSF
IWKYLSEKIIESLTNENSMHLTRLLALLTSILQKGHLGKITDFEPLVKLVDQLVETFVVC
PPTMKKMDLHSEVIEKVLKLMLCVIGCLSDSKNMPALLLVSVQWESVFNIRSRSLLTFLG
DLLMKDPSIYHVFGTNIMCAFTNLIEIYDEEVMYILMKFCEKVEVNNCCFWDGKSKEKFS
RIFVFFEETLHYWIGEISNSVEGKLFPAQRNKLAVLWAVIGCYSHFADVQENSSVLMELI
SAIDKLLMVESKAGFQQDTWYCLLGAALRSYNKLVSRRGIDPEESAMLKFLDLAKRYKLS
PHVLSAVADILDSVFCASPRKCQFRLSESIAGESLDALRIFSENLSHECREIRLSTLRIL
CHYESVHDKDSAKNHTVENNSEIDDVETNLEYCCHNNVLNLLRSVEETALSVATSRRVIL
LISQLQTNLSDHRVADEYILAALNGILGILHNRFSCFWDPALECLTVLVGQYFGIVWDRF
INYLEQCHCDFLASHCQHDRDYNDSVEESGLVGCFNSDIVVVFDSTPRATILSLLIQSLQ
KVPVIAESHSQQIVPLFLKYLGYNGEEATSVESYTLDRKGKEWKGVLKEWLILFRLMHNP
RSLYQGRFLRDVLMHRLLDQNDADIQTKVLDCLLNWKDDFLLAYSENLKNLINLKNMRDV
LARWSLSRISVDSVDERHRAYLVPIVVRILIPKVRNLKMLTTQKNAKAYRKAVLGFLAEL
DLDELPLFFWLLVKPLLPDEMSKTCWASFKSHQFEVDEPDILNLLTSTAIETLSWKKKFG
FLHVVEDILAVFDESRIKPFLNILINCVVLISLSCSSVLGCKTRDKSPVEDSSSLDLGVH
DNDAVEDKNKERMQIMVLMSLSLKVIYTVLSKYDDHNFGSVFWDVFFSSVKPLVANFKKE
CHDKKKPSSMFYCFLAMSKSYRLVPLLSKVENLVPNIFSMLSVPLASEPVLSCILKFTKN
LLKLDKALDGPDVTVKTVILPHLDKLISGLHCIFIKENATERRLLKFLEKRDITIFRLLS
VYVKEPSDAKLFIDILLQFLTKERLNSDTCVHVLEIIGRVVTVLDSAISKKIWTSLSSLL
ISADMDVRMHTCNVLNAVASNDASLVPLAKILCKLCKAAAEVMNGLDHDGTVLSPYEEVN
VEFFYTIEEKHALSILALAVNDMSSEETVLRQSAYQLLLSFVEFSGKILNGSLESNQMWS
RASIRKMINNFLLKHMGNAMNKEGTRKKIWIEFLSEMVRKLPREAKLYSYRALCCDDVEQ
DFFYNIVHLQKHRRARALARFSNFVSSVYLSKAITYKVFVPLLFSMLFNAQDGKDESIRS
ACVNALASISGCMNWDQYNALLVRCFRYMALKPDRQKVLLRLVCAILDRFHFQETTLMRI
TVHDELLPSIQETLQQNIFPEVQELLASASDSINVNICLVVLKLLKLLPTDIMYSQLPTV
VHRISNFLKNRLESVRDEARSALSACLKELGLEYLQFIVNVLKGILKRGYELHVLGYTLN
FLLSKFLVSPICGKLDYCLDDLLIVVQNDILGGVSDEKEVEKIASKMKETRKQKSYETLK
LIAQNVTFKTHALKLLSPVTVNLHKQYDQKLKIKLETMLRHISAGIESNPSVEQKELFIF
VNCLIKDGLGDEGNVQGYGSISWAVCRDAESIQPIESNRLVNVDQQFSHLITVFALDVLH
NYLKKLKPSAEDGQLLSMLDPFVSLLCQCLSSKYEHIITAAVRCFTLIVRLPLSSLQCQA
DKIKNSLLVIAQGSVKVNSQLIESCMKLLTTLLRSERVTFSTDQLHMLIQFPLFVDFAKR
PSFVALSLLKAIIHRKLVVSEIYVLVQIVAEIMVKTQDKTIRKKCSKILIQFLLGYQLSQ
KRVQEHLDFLLVNLSYEHSSGREAVLEMLYTIIIKFPQNVVDAQSQTLFVYLVKSLANDD
DRNVRKMSAAAIKCLIGHVSSHSLHSVLEYSLFLYLGGKQNLLGAAAQVLGLLVEVIGKN
FQVHLNKVLPTMRNILQSAHVALASTQQDLSDVLVIPFWKEAYYSLVMLQKILTQFHNLF
LDKELEDFWEIVCEFLLHPHLWLRNIACQILSSYFTAVANREKSKVRAEAFYIMKPSTLF
HIAVSFCCQLRVPSNDNENGNVIKQNLEFSISALHDFLKNNVSNFWSSLDSAEQECFLKA
FDILDPRKGKRMLQSFISEGGVQHDENEHPFISYFLQRLGKLTFQMEANQMKIVFEFYKA
ISPKLLHFWENSSPASFDDGRSFAYQLLLPLYRVCEGFTGQVISDDLTQQAQEVRDGIRG
IIGEHKFVQVYRQIRNNIKEKRDKRKQAEKVMAVVNPMRNAKRKRKIADKHQAHKKRKMI
TMKMGRWMH
NT seq
7950 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacttcgattaagtctctaaaaaaatgcaccggccgccgcttcatcttcaagacg
ttttcacaaagggttgaggaaattgacatagatgtgtaccgaagtctagacccattgaaa
gctgaaccctcggaaggctcctcttttttccgggattgtcttattgaatacagagagctt
aacactgctagggattttatatcattttatgaggagttttttcctctggtacagacactt
ccccaaattatcttgcacaaaaaacggattatgaaaagccttctgtctcgattaaatatg
aaagggagactttcacttgagccaatactaaggctgatttctgctttatctagagatctc
ttggacgattttacagaatttctttcaaaaattattgattctttgaaagtgcttcttaaa
agtggtgctgataaggatccagaactaattgagcagatattcacatcatggtcatacata
ataatgtacctggagaagtatcttataaaagatgttggtgatattctaagtgtcatgata
aatttaagatactaccctaaggattatgttcgtgaatttatggctgagtcagtgtcatat
ttgcttaggaaagcgtcaattgagcaactaaagagaggtgttcagaaacttatggctgaa
gttgttgaggaaccatcggtagtgaggaaatctggtgttagtgctctactatctcatgct
atgagaatcatctcgtcgagattgcactcgagggccgagatattgttaccacttctggtt
gatgaatctatcttcgctatcgatggccaagactttaaagattcaagaccggttcttgaa
gttcttattctaaccttcgagagactttgtgcggagctagatccaggcgaattttctttc
atatggaaatacttgtcagaaaagataatagaatctttgacaaacgagaactctatgcac
ctgactcgtcttttggccctgcttacttctattttgcaaaagggtcatcttgggaaaatc
acagattttgaacccttggtcaaacttgtcgaccagcttgtggaaacttttgttgtttgt
cctcctacaatgaagaaaatggacctacactctgaagttattgaaaaagtcctgaaacta
atgctttgtgtcattggttgtctctctgattctaagaatatgcctgctttgctgctggtt
tctgtacagtgggaatcagtgttcaatataagaagtcgaagtttactgactttccttggg
gatcttctcatgaaggatcccagtatttatcatgtctttggaactaatataatgtgtgcg
ttcactaatttaatagaaatatatgacgaagaggtcatgtatatactgatgaagttctgt
gagaaagtggaagtgaacaactgctgcttttgggatgggaaatccaaggagaagttctca
agaatttttgtgttttttgaagagactcttcattactggatcggagaaatcagtaattct
gtggaaggaaaattatttcctgcccaacggaataagttggctgtcttatgggctgttatt
ggctgctattctcattttgcagatgtccaagaaaattcatctgtactaatggagttgata
agtgcaattgacaaacttctaatggtggaatctaaggcaggctttcagcaagatacttgg
tattgcttactcggggctgccttgcgttcttataacaagttggtgtctaggaggggtatt
gatcctgaagagtctgcaatgttaaagttcctggatcttgcaaaaagatataagctgtca
cctcacgtcttatctgctgtggcagatatattggattcagtcttctgtgcatcacctagg
aaatgtcaatttcgtctttcggagtctatagctggagagtccttggatgctctacgcata
ttctctgaaaatctgagccatgagtgcagagagatccgcctttcaaccctgcgcatactg
tgccattatgaatccgtgcatgataaagattcagctaagaatcatactgttgaaaataat
tcagaaattgatgatgttgagacgaatctagagtattgctgccataacaatgttctcaac
ctactcagatctgttgaagagaccgctctttcagtcgcaacaagccgtagagttattctc
ctaatttctcaattacagacgaatctgagtgatcatagagttgccgatgaatatatcttg
gccgctttaaatggaatattgggcatacttcataaccgatttagctgtttctgggatcca
gctttagagtgcctcactgtccttgttggccaatattttggaattgtgtgggacagattt
attaattatcttgaacagtgtcactgtgattttctagcatctcattgtcaacatgacaga
gattataatgactctgtggaggaatctggtttggttggatgcttcaactccgatatcgtt
gttgtatttgacagtactccccgtgcaacaatcttgtccctcttaattcaatctttacag
aaagttcctgtaatagctgaatctcactctcaacaaatagtacctttgtttcttaaatat
ctgggttacaatggtgaagaagccaccagtgttgaatcatatacactggatcgtaaaggg
aaagaatggaagggagttcttaaagagtggttaattttgttcagattgatgcataatcct
aggtctctctatcaaggccgatttctgagagatgtacttatgcataggcttcttgaccaa
aatgatgctgatatacagacaaaagttcttgactgcttactgaactggaaggatgacttt
ttacttgcatacagtgagaatctgaaaaatcttatcaatttaaaaaatatgcgggatgtg
cttgctaggtggagcttatccaggatttcggtggattctgttgatgagcgacatagagct
tatcttgtgcctatagtcgtacggatactcataccaaaagttagaaatttgaagatgctt
actacccagaagaatgcaaaggcatatcgaaaggcagttttgggctttttagctgagctt
gatcttgacgagcttcctcttttcttctggctattagttaagcccctgctgcctgatgaa
atgagcaaaacttgttgggcatcattcaaaagtcatcaatttgaggttgatgaacctgat
atcctgaatcttttaacatcaactgccatagaaaccctatcgtggaagaagaaatttggt
ttcctgcatgttgttgaagatattttggcagtttttgatgaatctcgcattaagcccttc
cttaatatactgattaactgtgttgtcctcatatcattgagctgctcatcagttcttggc
tgtaaaacacgtgataaatctcctgtagaggactcgtctagcttagatttgggggtgcat
gacaatgacgcagtggaggataagaacaaggagagaatgcaaatcatggtgttgatgtcc
ttgagccttaaggtcatatatactgttcttagtaaatatgatgatcataattttggaagt
gtgttttgggacgtgttcttctcatcagtaaaacctttggttgctaattttaagaaggaa
tgtcatgataagaaaaagccaagttcaatgttctattgttttcttgcaatgagtaaaagt
tacagacttgttccactactatctaaggtggagaatctggtacccaacattttctctatg
cttagtgttccactagcttcagaacccgtcttgtcttgtatcttgaagttcactaagaac
ttgttgaagcttgataaagccctggatggtccagatgtcacagtcaaaacagtaatactt
cctcatctcgataagctcatcagtggcttgcattgtattttcatcaaagaaaatgcgact
gagaggcggttgctcaaattcctggaaaaaagagatatcaccatctttcgcttgttgtca
gtgtatgtgaaggaaccatcagatgctaaattatttattgatatattgctccaatttctt
acaaaggaacgcctcaattctgatacttgtgtccatgtgttggaaatcattggcagagtg
gtgacggtcctggacagtgcaataagtaaaaagatttggacttcactttcctcgcttctt
atttcagctgatatggatgttcgtatgcatacatgcaatgtccttaatgctgttgcttcc
aatgatgcttctttggtaccgttggcaaaaattctttgtaagctatgcaaagccgctgca
gaagtgatgaatggtcttgaccatgatggcactgtcctctctccttatgaggaggttaat
gtggagttcttttataccattgaggaaaagcatgcattgtcaatcctggctcttgcagta
aatgatatgtcatccgaagaaacggtattacggcaaagtgcataccagttattgctttcc
ttcgttgaattttctggcaagatcctaaatggatctctagaatctaaccaaatgtggtct
agagctagtatccggaaaatgataaacaattttttgttgaaacacatgggaaatgcaatg
aacaaggaaggcactcgtaaaaagatatggattgaatttctttctgagatggtgcggaag
cttcccagggaagcaaaactttattcgtatagggccttatgttgtgatgatgttgaacaa
gatttcttctataacatagtacacttgcagaaacacaggagagcaagagcactagctcgt
tttagcaactttgtcagttcagtctatctttctaaggccatcacctacaaagtgtttgtc
ccactgctctttagcatgctttttaatgcccaagatgggaaggatgagagtataagaagt
gcttgtgttaatgccctggcatcaatatctggttgcatgaattgggaccagtacaacgcc
ttgctagtcagatgtttccgttatatggcactgaaaccagataggcaaaaagttttgttg
cgacttgtatgtgctatccttgatcgcttccattttcaggagacaactctgatgagaatc
actgttcatgacgaactactacctagcatacaggagactttgcaacaaaatatttttccc
gaagttcaggagttgttggcctctgcttctgacagtattaatgttaacatctgcctggtt
gtactaaaacttctaaaattgctccccactgatatcatgtactctcaacttccaactgtt
gttcaccgtatttcaaacttcctaaaaaatcgactcgaaagtgtacgtgatgaggctagg
tctgcgctgtcagcttgcttgaaggaactaggattggagtatttgcagtttattgtcaac
gtcttgaagggcatactgaagagaggctatgaattacacgtgctaggatacacactcaat
ttcttgctgtctaagttcctcgtgagtcccatctgcggaaagttggattactgcttggat
gatctccttattgttgtgcagaacgatatacttgggggtgtttctgacgagaaagaggtt
gaaaagattgcttccaaaatgaaagagactagaaagcagaaatcttatgaaactctgaaa
ttgattgcccagaatgtcactttcaaaacccatgctttgaaacttctttcccctgttaca
gttaatctgcataagcagtatgaccaaaagctcaagataaaattggagaccatgttaaga
cacatatctgctggtattgaaagtaatccatcagtggagcagaaggaactgttcatattt
gtgaattgcctcattaaagatggcctcggagatgaaggtaatgtacagggatatggttcc
atttcctgggcggtttgtagagatgctgagagtatacaaccaattgaaagtaacagatta
gtgaatgtcgatcagcaattttctcatttgataactgtatttgctcttgatgttctgcat
aactacttgaagaaactgaagccaagcgcagaggatggacaacttttatcaatgcttgat
ccttttgtaagtttattgtgtcaatgtttgagctcaaagtatgaacacattataacagca
gcagttaggtgctttactctgatagtgcggttgcctttatcatcccttcagtgtcaagct
gacaagataaagaattctttgttggttatagctcaaggatctgttaaagttaacagtcag
ttgatagagtcctgtatgaagttgttgacaacccttctgcgaagtgagagagtcacgttt
tctactgatcagttgcatatgctgatccaatttccattgtttgttgattttgcgaaaagg
ccctcatttgtcgccctttcactgttgaaggctatcatacaccgaaagctggtagttagc
gagatatatgttcttgtccagattgttgcagagataatggtaaaaacacaagataagacc
attcgtaaaaagtgtagtaaaatcttgattcagtttttactcggttaccaactttctcag
aagcgcgtgcaagaacatcttgatttcttacttgtaaatttgagttatgaacattcgagt
ggaagggaagctgtccttgagatgctctataccattattataaaatttccgcagaatgtt
gtggatgcccaatcacaaacactgtttgtatatttggtcaaatcgttggcaaatgacgac
gacagaaatgttagaaagatgtctgctgctgcaataaagtgtctcattgggcatgttagc
tcgcattctcttcactcagtactcgagtatagcctgtttttgtaccttggaggaaaacag
aacctattgggtgctgcagcacaggttttgggtttattagtggaagttattggaaagaat
tttcaagtacacctcaataaagtacttccaacaatgagaaatattcttcagtctgcacac
gttgctttagcatcaactcaacaagacttatcagatgttttagtaattccgttctggaag
gaggcatattattcgttggttatgttgcagaagatcctaactcaatttcataacttgttc
cttgataaggagcttgaggatttctgggaaatcgtctgtgaattcctcttgcatcctcat
ttgtggttgcgaaacatagcatgccagattctgtcttcttatttcactgcagtggccaat
agagagaagagcaaagtcagagcagaagcattctatatcatgaaaccgagcacactcttc
catatagctgtttctttctgctgtcagctgagggtgccatcaaatgataatgaaaatggc
aatgttatcaagcaaaacctcgagttctcaatttctgcacttcatgatttcttgaagaat
aatgtttctaatttctggtcgagtcttgatagtgccgagcaagaatgcttccttaaagct
tttgatattctcgatccaagaaaagggaagaggatgcttcaatcttttatttctgagggt
ggtgttcaacatgatgaaaacgagcatccatttatttcctattttctccagagattgggg
aagcttacctttcagatggaggccaatcagatgaaaattgtgttcgagttttacaaagca
atatcaccaaagctactccatttttgggagaattcttcacctgcaagctttgatgatggc
cgtagttttgcgtatcaactgttattgccgttgtacagagtctgcgaaggtttcactgga
caagttatttctgatgatctgacacaacaagcgcaagaggtccgggatggcattagaggc
atcatcggagagcataaatttgttcaagtttacagacaaatacgcaataatatcaaggag
aagcgcgacaaaaggaaacaagcagagaaggtgatggctgttgtgaatccgatgcgcaat
gccaagaggaagcgcaagatagctgacaagcatcaagctcacaagaaaaggaaaatgata
accatgaaaatgggtagatggatgcattga
DBGET
integrated database retrieval system
