KEGG   Salvia hispanica (chia): 125207190
Entry
125207190         CDS       T09851                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
shis  Salvia hispanica (chia)
Pathway
shis03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    125207190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shis03021]
    125207190
Enzymes [BR:shis01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     125207190
Transcription machinery [BR:shis03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     125207190
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 125207190
NCBI-ProteinID: XP_047962387
LinkDB
Position
2:13761434..13768634
AA seq 1214 aa
MDGWDFINEVGPSGVKDKFSNGSKQMEFDDDVDFNYSDSEDEVDCALQELDKGFLKGFCK
KASTAFFEKYGLIRHQINSYNDFVKHGIQQVFESIGEIMIEPGYDPTKRGDGEWRRATLR
FGKVTLDRPTFWTGEKFSSVDGAKEFLELLPRHAHLQNMTYSSRIKVETFLQVYTESPSR
SDKFKTGVDIVVEKTILSETQTDVNFGRLPVMVKSDLCWMSSPEPDGKEKRDCEFDQGGY
FVIKGAEKTFIAQEQICLKRLWVAKDPTWTVAYRPVAKRNRVYIKLIPKVEHLIAGDKIL
TAYFYVTEIPIWLLFFALGVPNDREVVKLIGLDTDENSAISNILVPSIYDADKKFDGFRK
AGNAIEHIKKLMQGCNFPPTETVDDLIDTYLFPNLRSRRQKASFLAYMVKCLLEAYRGLR
KVDNRDDFRNKRVELAGELLERELRVHIKHAERRMVKAIQRDLYKDREVQTIDHYFDASI
ITNGLSRAFSTGAWVHPYKRMERMSGVVANLRRTNPLQAVCDMRRTRQQVSYTGRVGDAR
YPHPSHWGKVCFLSTPDGENCGLVKNLASLGLVSTKILELESILKRFHECGMENLVDDGS
CLLDGKHKVFLDGDWVGVCKDSSSFVAKLRRKRRKMEIPDQIEIKRDKHQGEVRIFADAG
RILRPLFVVQNLKKIKDLKGEFLFQSLLNNGIVELIGPEEEEDCQTAWGIDYLFTAELDN
PPVKYTHCEFDSSFLLGLSCGIIPFANHDHARRVLYQSAKHSQQAIGYSTTNPSIRVDTN
SHQLYYPQRSLFRTMLSDCLGKSRYAEHHKGMMPRPDFFNGQCAIVAVNVHLGYNQEDSL
VMNRASLERGMFRTEHVRSYKAEVENSEAVGKRTKTDEFVSFGKMQSKIGRVDSLDDDGF
PFIGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRA
PCLGDKFSSMHGQKGVLGFLESQENFPFTIKGIVPDIVINPHAFPSRQTPGQLLEAALGK
GIALGGGLKYATPFSTPSVEDITTQLHRLGYSRWGGERVYDGRTGEKVESLIFMGPTYYQ
RLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT
LSDSSQMHICRKCKNMAGVIQRSVFGGQKVRGPYCRFCESVEDVVRVNVPYGAKLLCQEL
FSMGISLKFETELC
NT seq 3645 nt   +upstreamnt  +downstreamnt
atggatgggtgggattttataaatgaagtaggacctagcggcgtcaaggataaattttct
aatgggtcgaaacaaatggaatttgatgatgatgtagacttcaactattctgattctgaa
gatgaggtggattgtgccctgcaagaactggacaaaggcttcttgaaagggttctgtaag
aaggcttcaacggcgttcttcgagaaatatggtttaattagacaccagatcaattcttac
aatgactttgttaagcatgggatccaacaagtctttgaatccattggggagattatgatt
gaacctggatatgatcctacaaaaagaggagatggtgagtggagacgtgcaactcttagg
tttggaaaagtcacacttgatcgccctacattctggaccggtgaaaagttttcttcggtt
gatggtgctaaagagtttttggagcttttgcccaggcatgcacatcttcaaaatatgacc
tattcatccaggattaaagttgagacttttcttcaggtgtacacagaaagcccctcgaga
agtgacaaattcaaaactggtgtagatatagttgttgagaagacaatactgagtgagact
cagactgatgttaactttgggagactccctgtcatggtgaaatcggacttatgctggatg
agttcacctgaacctgatggtaaagaaaaaagagattgtgaatttgatcaagggggttat
tttgttatcaagggtgctgagaagacattcattgctcaggagcaaatatgccttaaaagg
ctgtgggtggctaaggatcctacatggacagttgcatatcgtccagtggcaaaaaggaat
cgagtgtatataaaattgattccaaaagtggagcatttgatagctggagacaagatcctc
actgcctacttttatgtcacggagattcctatttggcttttgttctttgctctgggtgtt
ccaaatgatagagaggtggttaagctgattggtctggacactgatgaaaactctgcaatt
tcaaatatactcgtgccatcgatatatgatgctgataagaaatttgatggtttccgtaag
gcaggcaatgctattgagcacatcaagaaactgatgcagggctgcaattttccacctaca
gaaacagtggatgatttgattgatacctatctctttcccaatctgaggagccggaggcag
aaggcttcttttcttgcctatatggtcaagtgcctgctggaggcttacagagggctccgc
aaagttgacaatagagatgactttaggaacaagagggtggagttggcaggtgaactcctt
gaaagagaactgagggtccacattaaacatgcggagaggcgaatggtgaaagccatacag
agagacctgtacaaagatagggaggtgcagaccatcgatcactactttgatgcctcaata
atcaccaatggtctttccagagccttctcaaccggagcttgggtgcacccttacaagagg
atggaaagaatgtctggtgtagttgctaatctgaggcgaacaaatcccttgcaggcagtc
tgtgatatgcgaagaactcgacagcaggtctcatacacaggcagagtcggtgatgctaga
tacccgcacccatctcattggggtaaggtctgctttctctctacaccagatggagaaaat
tgtggtctagttaagaatctggccagcctgggtcttgtcagtactaaaatcctggaacta
gaaagcattctaaagaggtttcatgagtgtggaatggagaatttggtcgatgatggttct
tgtttgcttgatggaaagcacaaagtttttctagatggagattgggttggagtatgcaaa
gattcttcatcatttgttgctaagctgagacgcaagagacgcaaaatggaaatacctgat
cagattgagatcaaaagagacaagcatcagggtgaagtgcgtatatttgctgatgctgga
aggatactgcgacctctctttgttgtccagaacttgaaaaagatcaaagatttgaaagga
gagtttttgtttcaatctcttcttaataatggcatagttgagttgatcggaccggaagag
gaagaagactgtcaaactgcatggggaattgactacctgttcactgccgaactagataac
ccacctgtgaaatatacccactgtgagtttgatagttctttccttctaggtttaagctgt
ggcataattccgtttgccaaccatgatcatgctaggagagttctttaccaatctgctaag
cactctcagcaagccattgggtactcgaccacaaatcctagcattcgagttgatacaaac
tcccatcagctgtactatccccagaggtctcttttcagaaccatgctttcagattgcctt
gggaagtctaggtatgctgagcatcacaaagggatgatgccgcgacctgacttcttcaac
ggccagtgtgctattgtggctgttaatgttcatcttgggtataatcaagaagactcactt
gtgatgaaccgtgcttctttagagcgtggcatgttcagaactgaacatgttaggagttac
aaggccgaggttgaaaattcagaagctgtggggaaaagaaccaagactgatgagtttgtt
agttttgggaagatgcaaagcaagatagggcgtgttgacagccttgatgatgatggcttt
ccctttattggtgcaaatctccaaactggtgacatagtcattggaaagcatgctgcttca
ggggttgatcatagcatcaagctcaagcatactgaaaggggcatggttcaaaaggttgtg
ctgtcagccaatgatgagggaaagaactttgcagttgtgtctttgagacaggttcgtgct
ccatgcctgggggacaaattttcgagcatgcacgggcagaaaggtgttctggggtttctg
gagtctcaggagaactttccttttaccataaaaggaatagttccagatattgtgataaac
ccacatgcgtttccttctcgacaaacacccggacaacttctggaagctgcccttggcaaa
gggattgcacttggaggtggactaaaatatgcgaccccattttccactccttcagttgaa
gatataaccacccaacttcacaggctcggatattccagatggggcggggaaagagtatat
gatggccgtacaggtgaaaaggttgaatctctcatctttatggggccaacatactaccag
cgtcttactcatatggctgaggacaaggtgaagttcagaaataccgggccggttcaccct
cttactcgtcagcccgttgctgacaggaaacgctttggtggaattaaatttggtgagatg
gaacgagactgccttatagcccatggtgcagcagccaatctacatgagcgtctattcacc
ctcagcgattcatcacagatgcacatatgcaggaagtgcaagaacatggctggtgtgatc
cagcgatcagtgtttggtggtcagaaggttcgtggcccatactgtcgattctgcgagtct
gtggaagatgtggtgagggtgaatgtgccatatggggctaagttgctttgccaagaactc
ttcagcatggggatttcactcaagtttgagactgagttgtgctga

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