Salvia hispanica (chia): 125207252
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Entry
125207252 CDS
T09851
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125207252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125207252
Enzymes [BR:
shis01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
125207252
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125207252
Multi subunit type E3
ERAD complex
125207252
LMBR1L-GP78-UBAC2 complex
125207252
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
CUE
zf-RING_11
zf-ANAPC11
zf-C3HC4_3
zf-C3HC4_2
zf-RING_5
U-box_ZFPL1
zf-C3HC4_4
zf_RING_Vps8_fungal
zf-RING_16
zf-RING_Vps41
PHD
RINGv
Motif
Other DBs
NCBI-GeneID:
125207252
NCBI-ProteinID:
XP_047962472
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All DBs
Position
2:complement(14884360..14891268)
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AA seq
574 aa
AA seq
DB search
MMGVNFLFVSAVCTILSVVGIQYWTEISLAKNQSDVLIANDLINSENATHTLEHLFGSYT
TLMLVSSLAFNVTILVILGLKTIFFSELYTSEIRKMLEKLVNYIIYKGTFLPLVVPPTIF
QLGLWSTWLAMLCFLKMFQALARDRLERLNASPSVTPWTYFRVYSALLLVFSVDLLWILL
CLRIYSTMTSSIFLLLFFEPSSIAFETLQAIVVHGFQLLDIWMHHSAGDASNFRLSEIFN
MFSAGSLGEWKGMLIRNLGFFLDMMTLLTALAHYLYIWWLHGMAFHLIDVVLFLNIRALL
SAIVKRLKGFVKLRMALGTLHGALPDATSEELKAYDDECAICREPMAKAKRLSCNHLFHL
ACLRSWLDQCLNESYSCPTCRKPLFTSRSESSVNPNAADLSRDEQLAHQISTALNGPDLP
GHNMHRGVFPNQAQNVEMSDWRRTGVNLSWLGLDGAGPSGLNRVQMLMRQLDVGETYAQS
TLQDAAWSLFPPNPSQTSTSRSAIPPAASTRYPGGTSGLHMRSTSTAANTNLENIITMAE
AVREVLPHVPDDVIFQDLQLTNSAMTTVNNLLQM
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgatgggtgtcaacttcttattcgtttctgctgtctgtaccattctgagcgtagttggc
attcagtattggacagaaatctcacttgcaaagaatcaatcagatgttttgattgcaaat
gatcttattaattcagaaaatgcaacccatactcttgagcatctatttggttcatacacg
acccttatgttggtttccagtttggcatttaatgtcaccatcttggtaatcttaggccta
aaaacaatattcttttcggagctgtatacatctgaaatccgaaaaatgcttgaaaagctt
gtgaattacatcatctacaaggggacttttcttccgttggtagtcccaccaacaatattt
caattaggtctatggtcaacttggctagccatgctttgcttcttaaagatgtttcaagct
ttagctagggatcgacttgaacgcttgaatgcttctccttctgtcactccgtggacatac
ttccgtgtatattctgctttgttgcttgttttctcagttgacttgctctggatattgcta
tgtctgagaatatacagtacaatgacttcatcaatatttttgttgttattttttgagcct
tctagcatagcttttgagacactacaggccattgtggtccatgggtttcagttgcttgat
atatggatgcatcactcagcaggagatgcatcaaatttccgattatctgaaatattcaat
atgttttcagcaggttcattgggggaatggaagggcatgcttatccggaatttgggattt
ttccttgacatgatgacgttgctaacggctcttgctcactacctatatatttggtggctt
catggcatggcatttcatcttatagatgtggtccttttcctaaatattcgtgccctttta
agtgctattgtgaagcgtttaaaagggttcgtcaaactgcgaatggctttgggaaccctt
catggggcacttcctgatgctacatctgaagagctcaaagcatatgatgatgagtgcgca
atttgtagggaaccgatggcaaaagctaagaggctgtcatgtaatcatttattccatctt
gcatgtttgagatcttggttggatcaatgtttaaatgagagctactcatgccccacttgt
cggaagccactctttacaagcagatctgaaagtagtgtgaatccaaatgctgcagatttg
tctagggatgagcaacttgctcatcagattagtactgcactcaatgggccagatcttccc
ggtcataacatgcaccgtggagtctttcccaaccaggcacagaatgtagaaatgagtgat
tggaggaggactggtgttaatttaagttggttggggttagatggagctggcccatctgga
ttaaatcgtgttcagatgttaatgaggcaacttgatgttggagaaacatacgcacagagt
acgcttcaagatgctgcgtggagtctgtttcctccaaacccatctcagaccagtacctcc
agatcagctatccctcctgctgcctcaacaagatatcctggaggcactagtggtttgcat
atgaggtcaacatctactgctgccaacaccaacctagaaaacataattacaatggccgaa
gcagttagagaagtgctgccacatgttccagacgatgtaatctttcaggatttgcagctg
acaaattctgcgatgaccactgtgaataatcttttgcaaatgtga
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