Salvia hispanica (chia): 125207440
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Entry
125207440 CDS
T09851
Name
(RefSeq) UV-stimulated scaffold protein A homolog
KO
K23720
UV-stimulated scaffold protein A
Organism
shis
Salvia hispanica (chia)
Pathway
shis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
125207440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shis03400
]
125207440
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
125207440
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
DUF7826
CDI
Motif
Other DBs
NCBI-GeneID:
125207440
NCBI-ProteinID:
XP_047962738
LinkDB
All DBs
Position
2:10520309..10523090
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AA seq
652 aa
AA seq
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MADEREKAAALIERAVDSTAAEVDPRLLKAIKFVVRNSDSELRCASQTLMSLMKRNHSQV
RYLALFIVDELFMRSKLFRSLLVENLDLFLSLSIGFRRNHPLPPPASIASLLRSKAIEFL
EKWNDSFGIHYRQLRLGYDYLKNTLRFQFPNLQANAARIQQERREREMRTRDILLKKFES
LKENFSSIKEEIQANIDEIDECLGILRMKDDGMQFDPVDNEEMEEFYNSELHQIRLDSLR
EAEKVQVDSENEVVIDALRESYKVLVTKHLAAVQEWISVLIRVEVADLSFRDSALKNLID
IRNLIQSTKRECEESGCELRKIANAEEEVIWEEGTVEQFDKGGAGPSCSKTPEAPSTSTA
NSTRDVKRAKKISNVTEKRNARSSVSNKDPVRSELLAEAPVLNWGSFLDRWGPNEDVMAN
QRGLDVEGHWGRVDQDAVIPAEKIAELSMRASVYEEKPLEIQPCRAPLKNGALCQRKDLR
VCPFHGPIIPRDDEGNSIKESSSTEEAVDQNQPEESSPNADSNVVHQLLKQAVQNVRERD
KEDAKKREVDKRALKRAKLAEVREHNEAMLRDAAIASTSRSYYVGEDREISNGSRTSSRR
KKQTLASMLKKKETSKDRLAQRLLNTNARDATIRQLTTAEEANYREAFPNQW
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgagagggagaaggcggcggcgttgatagagagagccgttgactctacggcg
gcggaggtggatccgcgcctcctcaaggcgatcaaattcgtggtgcgtaattccgattcg
gagctccgttgcgcctcccaaaccctaatgtctcttatgaagcgcaaccattctcaggta
cggtatcttgcacttttcatagtggatgagcttttcatgcgctcaaagcttttcagaagt
cttcttgttgagaacctggatctattccttagcttaagtattggttttagaagaaatcat
ccacttcctcctcctgcctctattgcatctcttcttcgatcgaaggcaatcgagttctta
gagaagtggaatgattcgtttggaattcattatcgacaactcagattaggttacgactat
ctcaagaatacccttcgtttccagtttcctaaccttcaggctaatgcagcccgcatacaa
caagagagaagggagagggaaatgagaacaagagatatcttactgaagaaatttgaatca
ttgaaagaaaatttctcatcaataaaagaggagatacaggccaatattgatgaaattgac
gagtgtctaggaattcttaggatgaaggatgatggcatgcagtttgatcctgtagataat
gaagaaatggaagagttctataactccgagctgcatcagatccgtcttgattctttgaga
gaggcggaaaaagtccaagtggacagtgaaaatgaagttgttattgatgctctgagggaa
tcttacaaggttctagtcactaagcatctcgctgcagttcaggagtggatttctgttctt
ataagagtggaagtggccgatctaagtttcagggattctgctttgaaaaatctcatagat
ataagaaatctcattcaatcaacaaaaagagaatgtgaagaatccggatgtgagcttcgt
aaaattgcaaatgctgaagaagaagttatttgggaagaaggcactgtcgaacaatttgac
aaaggaggggcaggtccaagctgttctaaaactcccgaagcacccagtacatcaacagct
aatagtacaagagatgtaaaacgagctaaaaaaatttcaaatgtaactgagaaaagaaat
gctcggagtagtgtaagtaacaaagatcctgtacgaagtgagcttttggctgaagctcca
gttcttaactggggatctttcttggaccgctggggaccaaacgaggatgttatggctaac
caaaggggactggatgttgaaggtcactggggtagggtcgaccaggatgcagttataccg
gccgagaaaattgcagaactgagcatgcgggcatctgtgtacgaagaaaagcctcttgaa
atccaaccgtgtagagctcctttgaagaatggtgcactttgtcaaagaaaagatttgaga
gtttgcccatttcatgggcccatcatccctagagacgatgagggaaattcaattaaggag
agctcctcaacagaagaggcagtcgaccaaaaccaaccagaagaatccagtccaaatgct
gacagtaatgtggtgcaccagctattaaagcaagctgtacagaatgttagggagagagac
aaagaagatgcaaaaaagagagaagtagacaagcgggccttaaagagagcaaagcttgca
gaagttcgggaacacaacgaagctatgctgcgagatgcagcaattgcttcaacttcaaga
tcatattatgtaggtgaagacagggaaataagtaatggatccagaacttctagtagaaga
aagaaacaaacgctggcatcaatgctgaaaaagaaagaaacttctaaagacagattggct
cagaggttactgaacactaatgcaagagatgctactatccgacagttgacaaccgctgaa
gaggcaaactaccgggaagcatttccaaaccaatggtag
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