Salvia hispanica (chia): 125207553
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Entry
125207553 CDS
T09851
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125207553
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125207553
Spliceosome [BR:
shis03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125207553
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
IstB_IS21
AAA_22
PhoH
Motif
Other DBs
NCBI-GeneID:
125207553
NCBI-ProteinID:
XP_047962901
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All DBs
Position
2:18393594..18400896
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AA seq
1167 aa
AA seq
DB search
MKASSIHSFLSPSPSPYPFTATTTKGLSPLPLFRPYPRLNFQYPQLLNSNRYSRFAATHK
FPNLVFPVGSSSQLSDDDIEVESDDDDEEEDDVAAEEYDVVAGEISEQYGDEEDEEVLEA
TEGVGPRYEEFKWQRVERIRNEVREFGEDIIDVEELASVYDFRIDKFQRLSIQAFLKGSS
VVVSAPTSSGKTLIAEAAAVATFSRGKRLFYTTPLKALSNQKFRDFRETFGDTNVGLLTG
DSAVNKDAQILIMTTEILRNMLYRSVGTDSSESMLSDVDVIVLDEVHYLSDISRGTVWEE
IVIYCPKQVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSTKTALLPL
LDQKGTSMNRKLSLNQLQLDSSRDNVYKDENPRRRKSKKYQFDVPPLTKHDMNSIRRSQV
PQVVDTLWHLKARDMLPAVWFIFSRKGCDAAVQYLEDCNLLDDCEITEVELALKKFRVKY
PDAVRESSAKGLLRGVAAHHAGCLPLWKSFIEELFQKGLVKVVFATETLAAGINMPARTA
VVSSLTKRIDSGRTFLSSNELLQMAGRAGRRGIDEKGHVVLLQTPYEGAEECCKVLFSGL
EPLVSQFTASYGMVLNLLAGAKFARSSAESDDLNNSQSGRTLEEARKLVEQSFGNYVGSN
VMLAAKEELARIQTEIQLLASEITDEAIDKKSKKLLSHTSYKEIADLQEELRVEKRIRSE
LRKIVEWERIYSLKPLLEELGNEHLPFMCLQHTDADGVLHQIPAVYLGKVDSLKTLKLKD
MVHESDSFALTNGRNSSDAEPEHAAEPSYYVALGSDNSWYLFTEKWIRTIYKTGFPNVAL
TQDDALPHEIMSSLLDKGDMQWQKVADSEFGGLWCMEGSLETWSWSLNVPVLSSLSDDDE
VLKFSEAYKNAVQCYKDQRNKVSRLKKKIARTEGFREYKKILDTAKFNEEKIRRLKARSL
RLSTRIEQIEPSGWKEFLQISNVIHEVRALDINSHFIFPLGETAAAIRGENELWLAMVLR
NKVLVDLKPAQLAAVCGGLVSEGIKVRPWKNNSYIYEASSTVMNVIAFLDELKSSLLDLQ
EKHGVQIPCCLDSQFAGMVEAWASGLTWREIMMECAMDEGDLARLLRRTIDLLAQVPKLP
DVDPRLKSNAVKASSVMDRPPISELVG
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcatcctccattcactccttcctctctccctcaccttctccatatccattcaca
gcaaccactaccaaggggctctctccattgcctctcttcaggccttatccccgcctcaac
ttccagtacccgcaattactcaattccaacaggtactcgcgtttcgcagcaactcacaaa
ttcccgaatttagtattccccgtcggttcgtcttctcagctctccgacgatgatattgaa
gttgaatccgacgacgacgacgaagaagaggacgacgtggcggcagaggagtacgacgtc
gttgctggtgaaatcagcgaacagtacggagatgaagaggacgaagaggttttggaggcg
accgaaggtgttggccccagatatgaggagttcaagtggcagagagtggagaggattagg
aatgaggtgcgggagtttggtgaggacatcattgatgtcgaggagctcgcctctgtttac
gacttcagaattgacaagttccagcgattgtccattcaagcattcctgaaaggttcttca
gttgtagtttctgcaccaactagtagtggaaaaacgttgattgctgaagctgctgcagtt
gctactttttcccgaggaaagagattgttttacactactcctttgaaagccttgtcaaat
cagaagtttcgtgactttcgtgagacatttggtgatactaatgttggactcctcactgga
gattctgctgtcaataaagatgctcaaattttgataatgaccacagagattttgcgcaac
atgctatatcggagtgttggaacagattcttctgaaagtatgctttctgatgtggatgtg
attgttttggatgaagtgcattacttgagcgacatatcccggggtacagtttgggaagaa
attgtgatatactgccccaaacaagtgcaattaatatgtctttctgccactgttgcaaat
ccagatgagttggcaggttggattggtcagattcatggaaaaactgagttggtaacatca
tccaagcgtccggttccgttgacttggcacttctcaacaaagacagcattgttaccactt
cttgatcaaaaaggcactagcatgaacaggaagctgtccctaaaccagttacagcttgat
tcttcaagagataatgtatacaaggatgagaatcctagaagaaggaaatcaaagaaatat
cagtttgatgttcctccacttacaaagcatgacatgaactctatacgccggtcgcaggtt
cctcaagttgtagatacattatggcatcttaaagcaagagatatgcttccagcagtctgg
ttcatctttagcagaaaaggttgtgatgctgctgttcaatatcttgaagactgcaacctg
ttggatgattgtgagataaccgaagtagagcttgcacttaaaaagtttcgtgttaaatat
cctgatgctgttagggaatcttctgcaaaaggacttcttcgaggtgttgctgctcatcat
gctggttgccttcccctttggaaatcgttcattgaggagcttttccaaaaggggcttgtg
aaggttgtttttgccacggaaactcttgctgctggaattaacatgcctgcaagaactgct
gttgtgtcatctctgaccaaaaggattgacagtggtcgcacatttttaagttccaatgag
ctgctacaaatggcaggacgtgctggccgtagaggcattgatgaaaagggtcatgtcgtt
cttcttcaaacaccatatgaaggagctgaagaatgctgcaaagttctcttttctggacta
gaacctcttgtttcacagtttacagcttcgtatgggatggtgcttaatctacttgcgggc
gcaaaatttgcacgtagctcggctgaatcagatgacttgaataactcacaatctggtcgg
acattggaagaagcaagaaagttggttgaacaaagtttcggaaattatgtggggagcaat
gtcatgcttgctgctaaggaggagctcgctaggatacagactgagatacagttgctggcg
tcggaaattacagatgaagctatcgataagaagagtaaaaaattactgtcacatacatct
tacaaagagattgccgatcttcaggaagaattgagggtagagaaacgtattcgctctgaa
cttcggaaaatagtggaatgggagagaatttattctttaaagcccctactcgaggagctt
gggaatgagcacttaccttttatgtgtctccagcatactgatgcagacggtgttctgcat
caaatccctgctgtttatttggggaaggttgattctttaaagactttaaaattgaaagat
atggttcacgaatctgattcttttgcgctgactaatggaagaaattcaagtgatgctgag
cctgaacatgctgctgaaccatcgtattatgtagcacttggttcggataactcttggtac
cttttcactgagaaatggatcagaaccatctataaaactggatttcccaacgttgccttg
actcaagatgatgctttacctcatgaaataatgtcgagtctgcttgataagggagatatg
cagtggcaaaaggttgcagactcagaatttggtggtttatggtgcatggaaggatcactt
gagacgtggtcgtggagtttaaatgtgccagtcttgagtagtctctctgatgatgatgag
gtcctgaagttctctgaagcatacaaaaatgctgtccaatgctacaaggaccaaagaaac
aaagtttcgcgtctgaagaaaaaaatagcacgaacagaaggcttcagagaatacaagaag
attctagatacagccaaatttaacgaagaaaagatacggagattgaaggctagatcactt
cgtttgtccactcgaatagagcagatagaaccatctggctggaaggaatttcttcagatc
agcaatgtcatacatgaagtcagggcattggatatcaactcacactttatatttcccctg
ggtgaaactgctgctgcaattcgtggggagaatgaactctggttagcaatggttcttcga
aataaagtccttgttgatttgaaacctgcacagcttgctgcggtttgtggaggtttagtg
tctgaaggaatcaaagttcggccatggaaaaataatagctatatttatgaagcctcgtcc
actgttatgaatgtgatcgcctttttggatgaactgaagagctcacttttggatctccag
gaaaagcatggagtgcagattccttgctgcctggatagccaattcgcgggcatggttgaa
gcttgggcttctggtctaacatggagagagattatgatggagtgtgccatggacgaagga
gatctagcacgccttttacgacgaaccattgatctattagcacaggtgcctaaattgcct
gatgttgatccacggctcaaaagcaacgctgtgaaagcttcgagcgtcatggaccgtcca
cccattagtgaattggtaggatga
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