Salvia hispanica (chia): 125207850
Help
Entry
125207850 CDS
T09851
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis00040
Pentose and glucuronate interconversions
shis01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125207850
Enzymes [BR:
shis01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125207850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
125207850
NCBI-ProteinID:
XP_047963308
LinkDB
All DBs
Position
2:complement(15132818..15134397)
Genome browser
AA seq
401 aa
AA seq
DB search
MGTQILMFTLLALLAPKFTFSSPVPDPELIVQEVNEKINASRRNLGFLSCGTGNPIDDCW
RCDPNWEKNRQRLADCAIGFGKHATGGRDGKIYVVTDSGDHAVNPKPGTLRYGVIQNEPL
WIIFARDMVIRLKQELMVNSFKTIDGRGASVHIAGGPCITVQYVTNVIIHGLNIHDCKQG
GNAYVRDSPDHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNN
YLTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEM
YAIGGSASPTINSQGNRFLAPDREDNKEVTKHEDAPESEWKRWNWRSEGDLMLNGAFFTL
SGAGASSNYAKASSLSARPSSLVGTITGGSGSLNCRKGKRC
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgggaactcaaattctcatgttcacgctacttgcattattagctcctaaattcacattc
tcttcaccagtccctgaccctgagctcatagtacaagaagttaatgagaaaatcaatgcc
tccagaaggaacctggggttcctgtcctgcgggacaggcaatcccatcgacgactgctgg
cggtgtgacccaaactgggaaaagaatcgccagcgtctggcagactgcgcgatcgggttc
gggaagcacgcgaccgggggccgcgacggcaagatctacgtggtgacagactctggggac
cacgcggtgaatccgaagccgggcacccttcggtacggggtgatccagaacgagccactg
tggatcatattcgcgcgggacatggtgatccggctgaagcaggagctaatggtgaactct
ttcaagacgatcgacgggcgcggggcgagcgtgcacatcgcgggcggcccctgcatcacg
gtccaatacgtgaccaacgtgatcatccacggcctcaacatccacgactgcaagcagggc
gggaacgcctacgtccgggactcgcccgaccactacgggtggcggacggtctcggacggc
gacggcgtctccatttttggcgggagccacgtgtgggtggaccactgctccctctctaac
tgccgagacggcctcatcgacgccatacacggctccaccgccatcaccatctcaaacaac
tacctcacgcaccacaacaaggtcatgctgctcggccacagcgacagctacaagcaagat
aagaacatgcaagtcaccattgccttcaaccatttcggagaaggcctcgtgcagaggatg
ccaaggtgcaggcacggatattttcatgtggtgaacaacgattacacgcattgggaaatg
tacgcaattggcgggagcgcatcccctaccatcaacagccagggaaaccgctttctcgct
ccagacagggaagacaataaggaggttactaagcacgaggatgcgccagagagtgagtgg
aagaggtggaattggagatcggaaggggacctaatgctgaacggggccttcttcacgttg
tcgggtgcaggggcatcgtctaattatgcaaaggcctcgagtttaagtgcgcgaccttcg
tcattagtgggaaccatcaccggagggtccggttccctcaactgtaggaaaggcaaacgc
tgctga
DBGET
integrated database retrieval system