Salvia hispanica (chia): 125207913
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Entry
125207913 CDS
T09851
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis04120
Ubiquitin mediated proteolysis
shis04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125207913
04120 Ubiquitin mediated proteolysis
125207913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125207913
Enzymes [BR:
shis01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125207913
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125207913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_16
zf-RING_11
zf-RING_5
zf_RING_Vps8
zf-HC5HC2H
Prok-RING_4
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
125207913
NCBI-ProteinID:
XP_047963383
LinkDB
All DBs
Position
2:complement(30391616..30395583)
Genome browser
AA seq
501 aa
AA seq
DB search
MIGREQSEMMRLQTYGGISLIATLAVIYHAFSSRGQFYPAMVYLSTSKISLVLLLNMGLV
VMCILWQLTKKIFLGKLREAEVERLNEQSWREVMEILFAITIFRQDFSVSFIVMVTALLL
IKALHWLAQKRVEYIETTPSVPKLAHIRIVSFMGFLLLLDCSFLYNSIKYLLETKQASVS
LFFAFEYMILATTTVSTFLKYIFYVSDMLMDGQWEKKAVYTFYLELARDLLHLTMYMCFF
LVIFVNYGVPLHLIRELYETFRNFKIRIADYLRYRKITSNMNDRFPDATSEEINSSDATC
IICREEMTTAKKLLCGHLFHVHCLRSWLERQNTCPTCRAPVVPPEHGMSTTGTRSGGQQQ
GTSATGTSSQGSVSSGEANGNISQHQARLQAAASAASMYQKSFVYPSPSTLAWSPGHTVP
PQPFGPSGPNMTANDSASASQQDIQVKLIERQIEYLQWQLQHLQASGSEKKTGAGASDIK
GKAVSSPSSSSIVDSSETGNP
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgattggcagggaacagagcgaaatgatgaggctgcaaacttatggagggattagttta
atagctacactggctgttatctatcatgcatttagtagcagaggccagttttatccggca
atggtttacctttctacttcaaagatcagtttggtgctgcttttaaatatgggcctggta
gttatgtgcattttgtggcaattaacaaagaagatcttccttggcaagttacgagaagcg
gaagtggaaaggctgaatgagcagtcatggcgggaagtcatggaaatactgtttgccata
actattttcagacaagatttttcggtttcatttatagtgatggttactgcattacttttg
atcaaagctttgcattggttggcccagaagagagttgaatacattgaaacgactccatct
gttcctaagctagctcatatccgaattgtatctttcatgggattccttctccttcttgat
tgtagctttctctacaattcaatcaagtatctcttggaaaccaaacaggcttcagtttca
ctattctttgcattcgagtacatgatactggccacaacaactgtatcaacatttttgaaa
tatatattctatgtcagtgacatgcttatggatggacaatgggagaagaaggctgtttac
accttttacttggagcttgctcgagacttgcttcacttgactatgtacatgtgtttcttc
ctcgtcatttttgtgaactatggtgtgcctcttcacttgatacgggaactgtatgagact
ttccgtaacttcaaaatccgtattgctgactatctacgctatcggaagattacttcaaat
atgaatgatcgtttccctgatgcaacatctgaagagatcaactcgagtgatgcaacctgc
attatttgccgagaggagatgactactgcaaagaaacttctatgtgggcatctctttcat
gtccactgcctcaggtcatggttagaaagacaaaatacatgccctacatgcagagcacct
gttgtaccacctgaacatgggatgagtactactggaacgaggtctggtggtcaacaacaa
ggaactagcgctactggtacatcatctcaaggctctgtcagttctggtgaggcgaatggt
aatatcagtcagcatcaggctagactccaagctgctgcttctgctgcatctatgtatcag
aagtcttttgtgtatccttctccaagtactctagcatggtcgcctggacatactgtacct
cctcaaccatttggaccttccggccccaatatgacagctaatgatagtgcatcagcctct
caacaggatatacaagtaaaattaattgagcgccagattgagtatctacaatggcagctc
cagcatctacaagcatcaggcagtgagaagaaaacgggcgcaggagcatcagatattaaa
gggaaggcagtatcatcaccatcttcgtcgtctattgtagactctagtgagacgggcaac
ccatag
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