Salvia hispanica (chia): 125208315
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Entry
125208315 CDS
T09851
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
shis
Salvia hispanica (chia)
Pathway
shis04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
125208315
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Ortholog
Paralog
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
HATPase_c
PAS_9
PAS_4
PAS_8
PAS_3
Motif
Other DBs
NCBI-GeneID:
125208315
NCBI-ProteinID:
XP_047963853
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All DBs
Position
2:complement(32453837..32458553)
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AA seq
1137 aa
AA seq
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MAASGRKENTSQAQSSGTSHHQSRNFNHNSSLNRGGESMSKAVAQFTADARLHAVFEQSG
ESGRSFDYSQSVRTTNQSIPEQQITAYLSKMQRGGLIQPFGCMIAVDESDFRVIAYSENA
REMLALTPQSVPILEKPEFLTIGTDVRSLFTPSSSVLLERAFGAREITLLNPVWIHSKSS
GKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKILC
DTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYLGLHYPSTDIPQASRFLFK
QNRVRMIVDCHATPLKVIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVII
NGSDEDGGKGRHSMRLWGLVVGHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLS
DKRVLRTQTLLCDMLLRDSPTGIITQSPSIMDLVKCDGAALFYKGEYYPLGVTPTEAQIK
DIVEWLLAEHGDSTGLSTDSLGDAGYPGAASLGDAVCGMAVAYITSRDYLFWFRSHTAKE
IKWGGAKHHPEDKDDNQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILRDSFRD
ADGSNSKAVVPAAGGDMEIQEMDELSSVAREMVRLIETATAPIFAVDVEGRVNGWNAKVA
ELTGLSIEDAMGKSLVHDLVHKESEEVADKLLLNALRGEEDKNIELRLRTFGSEQHDKAV
YVIVNACCSKDYTDNIVGVCFVGHDITGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFAS
DENTCCSEWNTAMEKLTGWSRGDVLGKMLVGEIFGSCCRLKGPDAMTTFMIVLHNAIGGQ
DADQFPFSFFNKSGKYVQAMLTANKRLNMDGQIVGAFCFLQIASPELQQALRVQKQQEKK
CFSKMKELAYICQEIKNPLSGIRFTNSLLEATDLTEDQKQFLETSAACEKQMLKIMKDVD
LENIEDGSLELESVEFVLGSVIDAVVSQVMLLLRERGLQLIRDVPEEVKTLTVCGDQVRV
QQVLADFLISMARYAQSPEGWVEIQLRPSLKEVSEGVNIVHIEFRIVCPGEGLPPELVQD
MFHSSRWVTQEGLGLSMCRKILKLMKGEVQYIIESERCYFLISLDLPLHRRGLPNAG
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttctgggagaaaggagaatacttcacaagctcagtcttcaggtacgtcccat
catcaaagccgcaattttaaccataattcgagcttaaacaggggaggggaatctatgagt
aaggctgtggcgcaattcactgcggatgctaggcttcatgcggttttcgagcaatccggt
gagtctgggagatcctttgattactcacagagtgtgaggactactaatcaatctattcct
gagcagcagattactgcttatttgtcaaaaatgcagcgtggcggcctcattcagcctttt
ggttgtatgatagccgtggacgagtctgattttagggtgattgcctactctgagaacgcc
cgtgaaatgctggccttgactccgcagtcggtcccgattcttgagaagccggagttcttg
acgattgggactgatgtgaggagccttttcacaccctccagctctgtgctgttggagagg
gcttttggggcaagggagattactctgttgaatcctgtttggattcattccaagagctcc
gggaagccattttacgcgattctgcataggatagatgtagggattgtgattgatttagag
cctgcaaggactgaggacccagcgctctctattgctggtgcagtccagtcgcagaagctg
gccgtgcgagccatttcccatttgcagtcacttcctggtggcgatatcaagattttgtgt
gatactgtggttgagagtgtgagggagctcactgggtatgatcgggttatggtatataag
tttcacgaggatgagcatggtgaggttgtcgctgagagtaagaggccagatttggagccg
tatcttggtttgcattatccttctacagatataccacaggcttcgaggttcttgtttaag
cagaatagagtgaggatgattgtggactgtcacgcaactcctctaaaggtcattcaggac
gaggcgctgatgcagcccttatgtttggttggttcgacgcttagggcgcctcatggttgc
catgcccagtacatggcgaatatgggatctattgcctcgttgacattggctgttatcatc
aatggaagtgatgaagatggtggtaaaggaaggcattcaatgaggctgtggggcttggtt
gttgggcatcacacatcagcaagatgtattcctttcccacttcgttatgcttgtgaattc
ctgatgcaggcatttgggcttcagctgaatatggaattacaacttgcttcgcagttgtcg
gataaacgtgttctaaggacacaaacactgttgtgtgatatgttgctgcgtgattcacca
actggtattatcacacagagccctagtatcatggaccttgtcaaatgtgatggagctgct
ctcttctataaaggggagtattacccccttggagtaacacctactgaagcacagatcaag
gatattgtggagtggttgttggccgaacatggggactcaacgggtttgagtacagatagt
ctaggtgatgctgggtatcctggggcagcctctctaggtgatgcagtgtgtggaatggct
gttgcgtacatcacgtcaagagattatttgttctggttccgttcccacactgcaaaagag
atcaaatggggtggtgcaaagcatcacccagaggacaaagatgataatcagaggatgcat
ccccgttcttcgtttaaggcatttctagaagtggtcaagagccggagtctgccatgggac
aatgccgaaatggacgccatacactctctccagctaattctaagagattcatttagagat
gctgatggaagcaactctaaggcagtggtacctgccgcaggtggggacatggaaattcaa
gagatggatgaactcagttctgtagccagagaaatggtcaggttgatagagactgccact
gctcccatatttgctgtagatgttgaaggccgcgttaatgggtggaacgccaaagttgca
gagttgacgggtctttccattgaagatgcaatgggaaaatccttggttcatgatcttgtc
cacaaagaatcagaagaagttgctgacaagctcttgttaaatgctctaagaggtgaagaa
gataagaatatagaactaaggttgaggacatttggcagcgaacaacatgataaagctgta
tatgtgattgtcaacgcttgctgcagcaaggactacacagacaatatagttggtgtatgc
tttgttggtcacgacattactggccagaaagtggtgatggacaagttcatccacattcaa
ggtgattacaaagcaattgtacacagtcccaaccctctgatcccacctatatttgcttcg
gatgagaacacctgttgctccgagtggaacactgccatggaaaagctcactggatggagt
agaggggatgtcttggggaagatgttagttggggagatatttggaagttgctgccggctc
aaaggcccagatgctatgacaacgttcatgattgtactgcacaatgcaattggaggccag
gacgctgatcagttcccgttttcctttttcaacaaaagtgggaaatatgtgcaagcaatg
ttgacagcaaacaagcggctgaatatggatggacagattgttggcgctttttgcttcctg
cagattgctagccctgaattgcagcaggctttgagagtccaaaagcaacaggaaaagaag
tgtttctcaaagatgaaggagcttgcttacatctgtcaagaaataaaaaacccattaagt
ggcatccgtttcaccaactcactgttggaagctacagacttgactgaagaccaaaagcag
tttcttgagaccagtgctgcttgtgagaagcagatgttaaagattatgaaggatgttgat
ctcgaaaacatcgaggatggatcgttggagcttgagagtgtagaatttgtgcttgggagt
gtaatagacgctgttgtgagccaagttatgttgttgctgagagaaagaggtctgcaattg
atccgtgatgtaccagaagaagtcaagactttgacagtctgtggcgatcaagttagagtc
caacaggtcttggcggattttctgataagcatggcccgatatgcacagtcccccgaaggc
tgggtggaaattcaactcagaccaagcttgaaggaagtctctgaaggagtgaacattgtg
cacatagagttcaggatcgtgtgcccgggggaaggtcttccgcctgaactggtccaagac
atgttccacagcagccgatgggtgactcaggaaggcctaggactgagcatgtgcaggaaa
attctgaagctgatgaaaggggaagttcaatacatcattgaatcagaacgatgctacttc
ctcatttctctcgatctgcccctgcaccggagaggcttgccaaatgctgggtga
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