Salvia hispanica (chia): 125208963
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Entry
125208963 CDS
T09851
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125208963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125208963
Enzymes [BR:
shis01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
125208963
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125208963
Multi subunit type E3
ERAD complex
125208963
LMBR1L-GP78-UBAC2 complex
125208963
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
CUE
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-RING_11
U-box_ZFPL1
zf-C3HC4_3
zf-C3HC4_2
zf-RING_5
zf-C3HC4_4
zf_RING_Vps8_fungal
zf-RING_16
zf-RING_Vps41
PHD
RINGv
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
125208963
NCBI-ProteinID:
XP_047964466
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All DBs
Position
3:32602061..32606488
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AA seq
495 aa
AA seq
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MQTVFFSELYTSEIRKMLERLVNYIIYKGTFLPLVVPPTIFQAGLWSTWLAMLCFLKMFQ
ALARDRLERLNASPSVTPWTYFRVYSALLLVFSVDLLWILLCVTIYSAMPSSIFLLLFFE
PSSIAFETLQAIAVHGFQLLDIWMHHSAGDAANSQLSKIFNMSSAGSLGEWKVMIIRNFG
FFLDMMTLLMALAHYLYIWWLHGMAFHLVDAVLFLNIRALLSAIVKRVKGFVKLRMALGT
LHGALPDATSEQLKAYDDECAICREPMAKAKRLSCNHLFHLACLRSWLDQCLSESYSCPT
CRKPLFTNRPESTVNPNAADLSRDEQLAHQISTALNGPDLPGHNLHPGVFTNQPQNLEMS
DWRRTGVNLSWLGLDGAGPSGLNRVQMLMRQLDVGETYAHSTLEDAAWSLFPPNPSQIGT
SRTPIPPAASTRYPGGTSGLHLRSTSNAANTNFENIIAMAETVREVLPHVPDDVIFQDLQ
LTNSAMATVNNLLQM
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgcagacagtattcttttcggagttgtatacatctgaaatccgaaaaatgcttgaaagg
ctcgtgaattacatcatctacaagggaacttttcttccattggtagtcccaccaacaata
tttcaagcaggtctatggtcaacttggttagccatgctttgcttcttaaagatgtttcaa
gctttagctagggatcggcttgaacgcttgaatgcttcaccttctgtcaccccatggaca
tacttccgtgtatattctgctttgttgcttgttttctctgttgacttgctctggatattg
ctatgtgtgacaatctacagtgcaatgccttcatcaatatttttgttgttattttttgag
ccatctagcatagcttttgagacactgcaggccattgcggtccatgggtttcagttgctg
gatatatggatgcatcactccgcaggagatgctgcaaattcacaattatctaaaatcttc
aatatgtcttccgcaggttcactgggggaatggaaagtcatgattattcggaattttgga
tttttccttgacatgatgacgttgctaatggctcttgctcactacctatatatttggtgg
cttcatggcatggcatttcatcttgtagatgcggtccttttcctaaatattcgtgccctt
ctaagtgctattgtgaagcgtgtcaaaggtttcgtcaaattgcgtatggctttgggaacc
cttcatggggcacttcctgatgccacatctgaacagctcaaagcatatgatgatgagtgc
gcaatttgtagggaaccgatggcaaaagctaagaggctgtcatgtaatcatttattccat
ctcgcatgtttgagatcttggttggatcaatgtttaagtgagagttactcatgccccact
tgtcgcaagccgctctttacaaacagacctgaaagtactgtgaatccaaatgctgcagat
ttgtctagagatgagcaactcgctcatcagattagtactgcactcaatgggccagatctt
cccggtcataacctgcacccgggagtctttaccaaccagccccagaacctagaaatgagt
gattggaggaggacgggtgtaaatttaagctggttgggtttagatggagctggcccatct
ggattaaatcgtgttcagatgttaatgaggcaacttgacgttggagaaacttatgcacat
agtacgcttgaagatgctgcatggagtctgtttcctccgaacccatctcagattggtacc
tcgagaacacctatccctcccgctgcctcaacaagatatccgggaggcactagtggtttg
catttaaggtcaacatctaacgctgccaacaccaactttgaaaacataattgcaatggcc
gaaacagtcagagaagtgctgccccacgttccagacgatgtaatctttcaggatttgcag
ctgacaaattctgcgatggcgacagtgaataatcttttgcaaatgtga
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