Salvia hispanica (chia): 125209015
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Entry
125209015 CDS
T09851
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125209015
09123 Folding, sorting and degradation
03018 RNA degradation
125209015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125209015
03041 Spliceosome [BR:
shis03041
]
125209015
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125209015
mRNA degradation factors
5'-3' decay
Lsm complex
125209015
Spliceosome [BR:
shis03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125209015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
125209015
NCBI-ProteinID:
XP_047964545
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Position
1:complement(39642683..39645216)
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AA seq
98 aa
AA seq
DB search
MATGAGLETLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDASLDLSKLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcaactggagctggacttgagactcttgttgatcaaacaatttcagttatcacaaat
gatgggcggaatattgtgggaattctaaaaggtttcgatcaagctaccaacataattctt
gatgagtctcatgaacgtgtgtactccacaaaggaaggcgtgcaacaacttgttttgggc
ctctacatcatccggggcgataacataagcattgttggagagttggatgaagagctagat
gcaagcttggacttatcgaaacttagagctcatcctttgaagccagtcattcactga
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