Salvia hispanica (chia): 125209133
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Entry
125209133 CDS
T09851
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
shis
Salvia hispanica (chia)
Pathway
shis04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125209133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shis04131
]
125209133
Membrane trafficking [BR:
shis04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125209133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
Beta-prop_EML_2
TPR_VPS8_2
Beta-prop_WDR3_1st
Beta-prop_WDR5
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_THOC3
Clathrin
Beta-prop_EML
WD40_Gbeta
Beta-prop_HPS5
zf-RING_Vps41
zf_RING_Vps8
WD40
Beta-prop_LRRK2
zf-RING_2
Beta-prop_RIG_2nd
WD40_Prp19
bPH_7
Motif
Other DBs
NCBI-GeneID:
125209133
NCBI-ProteinID:
XP_047964699
LinkDB
All DBs
Position
1:3536481..3545404
Genome browser
AA seq
1889 aa
AA seq
DB search
MEHPIAADVEMDIDSLLQSHGGETDSDEEDRHRRTVDEILLNHSSPSPSPPSSPLRGVGD
DDGSDASANLRDHGLSHSHSVPLVDSHSYRYNSASNSSRANFAGRVLPPLFGNGAVRSNA
KPGAALAAAAAASRSIPTPHATAIKLRRANTGVPSLQSSISETAENFDSAASSLSAEPSE
VDLSQSQEEGGVQLPLGNIDSDSTGVGGGDGDSDHGASSSEDTNQQKSDEDATLETSYDD
EECTMLTSKPRHASNIQSEEDQIPVIEQVSSPSAGEENVQCAEIRAADESGDVALPSPAS
SGVDYGEDIIRGEAASNPENTVAESEECDHSSGHNDAAQLLEDLVSQGEEEDTYTKLQQK
SDSSVKPLDLAEEIEKKQAFTGLHYEEGAAAQPMRLEGVKRGSTVLGYFDVRSDNVLTRI
ISSQAFRKDHGSPQVISVHLNYIAVGMSKGSIFVVPSKYTAHHVDNMDTKMIPLGLQGDR
SLVPVTSMCFNQQGDILFAGYGDGHYTVWDVQKVSALKVVTEHRAPVVHMLYLGQDTQVT
RQFNVVSGDSKGVVKLIRFTVVPWLNRISYTKPMKLLDETTSRVVCASPLLYNEGYGGSM
LASQSSSTVSTSSISSMMSGMVDEGVVIFITHQSALVAKVIPTVEVYAQIPKPDGIREGS
MPYAAWRCGSRSLTSSSENALAEASDKASLLAIAWDHKVQVAKLLNSELKVLEKWTLESE
AVGLAWLGDQMLAILTSTAQLCLYAKDGNLIHQTSFSVDGFRGDNLISHHIYYTNSSGNP
EKAYHNSISVRGATMYILGQDHLIVSRLLSWKERIEVLRKAGDWIGALNMAMALYDGQSY
GLVDLPKNLDDLQRTVMPYLAELLQAYVSEVFSYLSVACYNQNTKEDEYNEIKEQFIRVG
GVAVEFCVHIRRTDILFEDIMSKFDEAHQKETFLELLEPYILKDMLGSLPPGIMQALVEH
YSKRGWLQRIEQCVLHMDILSLDFNQVVRLCREHRLDCALIYLFNKGLDDFRTPLEELLL
VLRDSTRENATSLGYRVLVYLKYCFQGLAFPPGHGNLSPQRVTSLRKELLDFLLEDSSAP
NSWAVTSLSSGGAYANMLHLLQLDTEATLQVLKLAFVDVELSTSGQPSEEATDINMESDA
SDKLIQRVVDILAGILDAGYFMSDSPVCSTETNSVEVWPSKEDVGHMYDFIAYYVAYGKA
TVSKDILSQIIQYFTSEVNISDTLSEKVTDIFRKREKQLLSLIQVVPETQWDAPYLLHLS
EKAQFHKVCGYIHAISHQLVAAMDSYIKAIQEPVYAFSFIYEMLRLLDGEESDAFESAVI
SRIPYLVKLSREATYFLITDHFSGRSAYILSDLQSHPESLFLYLKTVIEFQTTGTLDISC
LQDVDTFDYPSPTNSKLQSNGVQAYLEAISTSLKLLHNNRVNVTDEMMELYFELLCRFDR
KSVLKFLETSESYRVEHCLSLCQEYGITDAASFLLERVGEVGSALLLILSHLSEKFVMLD
EEIQRAISCPVVDNLNALLKKKVVAEILDIVRACIGLCQRNSPRLQPEESESLWFQLLDS
FCEPLIDSGNARETLKDSPTGSVNPEEEAQTFKWKVSKYGKCAHMARKLFSIFIKEIVEG
MIGYVRLPRIMLKLLSENGNQEFGDFKLTILGILGRYDFERRILDTAKSLIEDDTYYTMS
LLMKGASHGYAPRSLVCCICSSLLAKNSLDSSIQVYSCGHATHLHCQLEGNRASFSGTLV
GCPICTPGSKTQKSSGMHKLAENGLVSSSPSSMKQPRSTPLLHLHDPEFGDNSFGSHPSR
FELLHSLEGDHKLIQMENTPQLKLAPPALYHEKLKKGIDNSSGGSTSRVSTTEKTNSKQL
RDVKLKGSPSVRFPLKSSIIFGKEKIRKR
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atggagcatccgatcgccgcggatgtggaaatggatatcgactctcttctccaatcgcac
ggcggcgaaaccgactccgacgaagaagatcgtcaccgccgcaccgtcgacgaaattctc
ctcaaccattcttctccctccccttctcctccttcttcccctctcagaggtgttggcgat
gacgatggaagcgacgcctcagccaatttgagagatcacggactatcgcattcacactcc
gttcctttggttgattcgcatagctataggtacaattcagcatcgaatagtagtagagcg
aacttcgcgggtagggttctgccgccgttatttggtaatggcgccgtcagatctaatgcg
aagcctggggctgcgctggccgccgctgctgctgcctctcgttcgattcccacgccccac
gccactgctatcaagttgagaagagcgaatactggcgttccctctcttcagagctcgatt
tctgaaactgcggagaattttgatagtgctgcttcgtcactatctgctgagccttccgaa
gttgatctcagccagtctcaagaagaaggaggagttcagcttcctcttggaaatatcgat
tctgactccacgggtgttggtggtggtgatggtgatagcgatcatggggcatcttcttct
gaagatacgaatcagcagaaatctgatgaggatgcgactctggagacatcttatgatgat
gaagaatgcacaatgctaactagtaaacctcgtcacgcttctaatattcaaagtgaagag
gatcaaattcctgtaattgagcaagtctcatctccttcggccggtgaagagaatgtgcaa
tgtgctgaaattagagctgctgatgaatctggtgatgtggctttacctagcccagcttcg
agtggtgttgattatggcgaagacataattaggggagaagcagcaagtaatcccgaaaac
actgtggctgaatccgaggaatgtgatcattctagtggacataatgatgctgcacaatta
cttgaggacttggtttcacaaggtgaagaggaggacacctatacaaagttgcagcagaaa
tctgattcttcggtgaagccacttgacttggctgaagaaattgagaagaaacaagcattt
acaggtttgcactacgaagagggtgcagctgcacagccgatgagacttgaaggtgttaaa
aggggctctactgtgttaggctactttgatgttcgttctgacaatgttctcacccggatc
atctcttcgcaagcctttcggaaagatcatggatccccccaagtcatatctgtacatttg
aactacattgcagtgggaatgtcgaaaggatcaatttttgttgtgcccagcaagtatact
gcgcatcatgttgataacatggatacaaagatgataccccttggtttgcaaggggataga
tctcttgtccctgtaacttccatgtgcttcaatcagcaaggagatatactctttgcagga
tatggtgatggtcattacactgtttgggatgtgcagaaggtctcagcacttaaggttgtc
actgaacacagagctccagtagttcacatgctatatctgggccaagatactcaagttacc
cgtcaatttaatgtggtcagtggtgacagcaagggtgtggtcaagttgattcgatttacc
gtggttccgtggctcaataggatatcttatacaaaacctatgaaacttttagatgaaact
actagcagagtagtatgtgcttctccattgctatacaatgaaggatatggaggttcaatg
ctggcttcgcagagtagctccacagtttctacaagtagtattagtagcatgatgagtggc
atggttgatgaaggtgttgtcatatttatcacacatcagtctgctcttgtggcaaaagtc
attcccactgtggaagtatatgctcaaattcccaaacctgatggcatcagggagggatcc
atgccatatgctgcctggagatgtgggtctcggtcgctcacttcatcctctgaaaatgct
cttgctgaggcgtcagataaagcttcattgcttgccattgcttgggaccacaaagttcag
gttgctaagctattaaattcagagttaaaagtgcttgaaaaatggactcttgaaagtgaa
gctgttggcctggcatggttgggagatcagatgctggccatcctcacatcgacagctcag
ctctgcttgtatgcaaaagatggaaatttgatccaccagactagcttttccgtggatggc
tttcgaggggataatttgatttctcatcacatatattatacgaactcttcagggaaccct
gagaaagcttatcacaacagtatttctgttaggggtgctactatgtatatacttggacag
gatcatctcattgtttctcgccttctctcatggaaggaacgaattgaagttctacgaaaa
gcgggtgactggattggtgccttaaacatggcgatggcactttatgatggtcaatcatac
ggtcttgtagatcttcccaaaaacttggatgacttgcaaagaactgttatgccttatctt
gcggagttacttcaggcatatgttagtgaagtattttcttacttatctgttgcttgttac
aaccaaaacacaaaagaggacgagtacaatgagattaaggagcaattcatccgtgttggt
ggtgttgctgttgaattttgtgtgcatatcaggagaactgacatactgtttgaagatatc
atgagtaaatttgacgaggctcaccaaaaagagacattcttggaactcttggagccatac
attttgaaagatatgctgggatctcttccacctgggatcatgcaagcattagtggagcac
tatagcaagagaggttggctacagcgaattgaacagtgcgtcctgcacatggatattctg
tccttggattttaatcaggttgtccgcttatgcagggaacacaggttggattgtgcgttg
atatatctatttaacaaaggcttagatgattttaggacacctcttgaggagctcctgcta
gtattacgagatagcacgagagaaaatgccacttccctcgggtacagggtgcttgtctac
ctgaagtattgcttccaaggtcttgcttttcctccaggacatggaaatctttctcctcag
cgtgtgacctctcttagaaaagaactgttagatttcctattagaggattcaagtgctcca
aattcatgggctgttacgagtttatcatcaggcggagcctatgcgaacatgcttcatctt
ttacagttggatactgaagccactctacaggttctaaaattggcctttgtagatgttgaa
ctatctacatcgggccaaccttctgaggaagcaactgatatcaacatggagtcagatgct
agtgacaaattgatccaaagagtggtggatattcttgctggtattcttgatgctggttac
ttcatgtccgacagtcctgtctgcagcactgaaacaaattcggtagaagtttggccttca
aaagaagatgtaggccacatgtacgattttatagcttactatgtggcttatgggaaagct
actgtatctaaagatattttaagtcaaatcatacaatattttacttcagaggtcaatatc
tcggatactctgtcggagaaggtgactgatatcttcagaaagagagagaaacaactgctt
tctctgatacaagtggtgcctgagactcagtgggatgctccttatttgttgcatttgtct
gagaaggcgcagtttcacaaggtgtgtggctacatacatgcaatcagtcatcaattagtt
gctgctatggacagttatataaaagcaatacaggagcctgtatatgcattctcttttatc
tatgaaatgttaaggctgcttgatggtgaagaatccgatgcttttgaatcagctgttatt
tctcgcattccatatcttgtcaaactgagcagagaagcaacttactttctaattactgac
catttttccggaagaagtgcatatattctgtctgaccttcagtctcacccagaaagcctt
ttcctttatctaaagactgttattgagttccagacaactggtacccttgacatctcttgt
ttgcaagatgttgatactttcgattatccttctccaacaaactctaagctgcagtcaaat
ggggtccaagcttatctggaagcaatatctacttccctgaagcttttacataacaaccga
gttaatgtgactgatgaaatgatggagctgtattttgagctcttatgtcgatttgatcgc
aaatcagtactcaagttcttggaaacttctgaaagctatagagtggaacactgcttaagt
ttatgccaggaatatggcataactgatgctgcttcattcttattagaaagggttggagag
gttggaagtgcccttcttctaattctttctcatctcagtgagaagtttgtcatgcttgat
gaagaaatccagagagcaatttcttgtccagttgtggataatctaaatgcacttctgaag
aaaaaagtggtggctgaaatacttgacattgtccgtgcttgtattgggttatgtcagaga
aatagtcctcgtctgcagcctgaagagtctgagtccctctggtttcagctgcttgattcg
ttttgtgagccattgatagattccggaaatgctagggaaacacttaaggactcacctact
ggatcagtaaatccagaagaagaggcgcagacattcaaatggaaagtctccaagtatggt
aaatgtgcacacatggcgaggaaactgttctccattttcattaaagaaattgtcgaggga
atgattggatatgttcggctcccacgaatcatgttgaaacttctttctgaaaatggaaat
caagaatttggtgattttaagcttaccatattggggatacttgggcgatatgattttgaa
agaagaattctggatactgcaaaaagtttgattgaggatgacacatattatacaatgagt
ttgctcatgaaaggagcttctcatggttatgcccctagaagtcttgtttgttgtatctgt
agctctctccttgccaaaaattctctggattctagcattcaagtatatagttgtggtcat
gcaacacatctccattgtcaactcgagggaaacagggcctcatttagtgggaccttagta
ggatgccccatttgtactccaggaagtaaaactcaaaagtctagtggcatgcataaactt
gcagagaatggattagtgagtagctctccgtcaagtatgaagcaaccacgtagcacacct
cttttgcatcttcacgatcctgaatttggagataattcctttggctcccatccatcaagg
tttgagctcctgcatagccttgaaggagatcataaattgattcagatggaaaacacgcct
cagttgaaacttgcaccgccagctctctaccatgaaaagttaaaaaagggaattgataac
tcgtcgggaggaagcacgagccgagtttctacaacagaaaaaacaaatagtaagcaactc
agggatgtgaaactgaaaggatcgccatctgtgcgattccccctgaaatcgagcattata
ttcggcaaggaaaagattaggaagaggtga
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integrated database retrieval system
