Salvia hispanica (chia): 125209350
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Entry
125209350 CDS
T09851
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03440
Homologous recombination
shis03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125209350
03460 Fanconi anemia pathway
125209350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shis03400
]
125209350
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125209350
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
125209350
FA (Fanconi anemia) pathway
Downstream FA components
125209350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
ResIII
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
125209350
NCBI-ProteinID:
XP_047964909
LinkDB
All DBs
Position
1:52743333..52751645
Genome browser
AA seq
1243 aa
AA seq
DB search
MEDSTSPSSNPNNLKSTPKSGGRSSTNTIHIGGIPVEFPYKPYGTQLAFMNRVISTLDRS
QREGHCHALLESPTGTGKSLSLLCSALAWQQNQKLKNIRNNLTHSSSRADPQAVSDPINH
GGGFIPETQPSGNQPPATNAKKEKQRLAPIIFYASRTHAQISQVIREYKKTSYRISMAVL
GSRKHYCTNPYLRGDEKVDEQCRLLLKNKEDSCPEYKNVHKVKGHPSLRKGGCHEVHDIE
DLVKIGHEVKGCSYFAAHSLAEEAELIFCPYNYIINPVIREGLEVNMRGSIIILDEAHNI
EDIARDGGSIDLEEESLLYLQTELGQLSLSDDLTYLPLLEMIQDILSWMDQRKTTLIKRD
FQRHFRCWTGDKASKELQEANISLQNFPILQQCAKKAIRIASEAEPDVSHLTAMGSLVLE
GLFSSLSYFFSENGIHVHNFELALQRVARKDEGKGGWSNTFSLWCLNPAVVFKSIAESAQ
SVILTSGTLSPLNTFSSELGVQFDTCLEAPHIIDVDSQVWTAAISTGPGNYPLNASYKTA
DDYAFQDAVGTSLEEICKVVPGGCLVFFPSYKLLDKLSTRWQETGQWSRLNAQKSIFVEP
RGSSQDSFEATLKEYYNYIRHGTRKSKGKKIRGRTLGLKNSNAVESTKDIKKEGASFLAV
CRGKVSEGMDFSDDNARAVVIVGIPFPNIYDIKVAQKKKFNDTNELSKNLLSGNEWYCQQ
AFRALNQAAGRCIRHRYDYGAIIFLDERLQRETNRAYLSKWLRKSLRLYSNFEESLDSLK
SFFRDVKLHTGITTTSSQDLVGDSENIKPMDTKMEAKKKNNKVTNSKGYQKKAEVKNASF
GEKAARLTQPPLSVSRYDSLSSGTRTEVVIVPDDDDAATCCKYIDIECNSEKQSRSSRTH
LVESYADDPELTIVKETPGMNCRGETTTEVYSRDECASPRATQLFSAFPHRTSSHPRSVQ
NCFSSPTLTCSEVATPELGTSSKVDNQEPEAESRWSANLNFGKRRKINCLSSVSRLHEFS
NPEKDCRKFKPSLSTPNSPAVSRISSDHNRDEGLRLFCSHCKNPLGLPENDLLVKCSHIS
TSKTHLMSLLKKASEPEALTPSSVDVLVSDAPSVHPRVLTSQESACGQGIWCKEDGCVFN
SIFCPFCDQSDNCIGVHVVATDELNTQFQNKILFYWDRLEIKKIEAEIKKVAKSEKVSPS
HGDSSVVENTSPNVFEKFAYTPSVQASGGWRCPKSRMRLPKKA
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccacttctccgtcgtctaaccctaataatctcaaatccacccccaaatcc
ggcggccgcagctccacgaacacgatccacatcggcggaattccggtggagttcccgtac
aagccatacggcactcagctggcgttcatgaaccgagtgatctccacactcgaccggtcg
caaagagagggccactgccacgcgctgctcgaatcgcccaccggcaccgggaagtcgctt
tcgctgctctgctccgcccttgcgtggcagcagaatcagaagctgaagaatattcgaaat
aatttaacccattcgagctctcgggctgaccctcaggctgtgagcgacccgattaatcac
ggaggtggcttcatccctgagactcagccatcagggaatcaaccgccagccaccaatgcc
aaaaaggagaaacaaagattagcaccgattatcttttatgcatcgaggacccatgctcaa
atcagtcaagtgatacgggagtacaagaaaacatcgtacaggatctccatggcagttttg
gggtcaagaaaacattactgcaccaatccctacttacgtggcgacgagaaagttgatgaa
caatgtcggttgctactgaagaataaagaagattcatgccccgaatacaaaaatgttcat
aaagtcaaaggtcatccctctcttcgaaaaggtggttgccatgaagtccatgacattgaa
gatcttgtcaaaattgggcatgaagttaaaggctgttcatattttgcggcacattctttg
gctgaagaagcagaactgatcttctgcccatataactatatcatcaatccagtcatccgg
gaaggactggaagttaatatgcgcgggagcatcattattttagatgaagcacacaatata
gaagacatagctcgtgatggtggtagcattgatcttgaggaggaatctttgctctatttg
cagacagaactgggacaactgagcttgagtgatgacctgacttacctacccttgcttgag
atgatacaggacatattgagttggatggatcaaagaaaaactacactgattaagcgtgat
ttccagcgccatttccgctgttggactggagataaagcttcaaaagagctacaagaagct
aatatatctctgcaaaattttccaatcttgcagcaatgtgccaaaaaggccatcagaatt
gcttcagaggctgagccagatgtttcccatttaactgcaatgggatcgcttgtcctggaa
ggattgttctcttcactcagctatttcttctctgaaaatggcatccacgtccacaacttt
gagctggcactgcaaagagtggcaaggaaagatgaaggcaaaggtggttggagcaacact
ttcagtttgtggtgcttgaatcctgccgttgtttttaaaagcattgctgaatctgcacaa
tcggtcattttaacttcaggaactctttcaccattgaatactttctcatctgaacttggc
gttcaatttgacacttgtctggaagccccacatatcatagatgttgattcgcaggtgtgg
actgctgcaatctccactggtcctggtaactatccactcaatgctagctacaagactgcg
gatgattatgctttccaggatgcagttggcacatctttggaggaaatatgcaaagtcgtt
cctggtggatgtctagttttctttcctagctacaagctgctggataaactaagcaccaga
tggcaggaaacaggccaatggtcccgattaaatgcgcaaaaatctatctttgtcgaacca
agagggagcagccaagattcttttgaggctactctgaaggaatactataattacatacgt
catggcacaagaaagtcgaaagggaaaaagattaggggcagaacgcttggccttaaaaat
agcaacgcggttgagtccacaaaagatattaagaaagaaggggcatcttttctagcagtt
tgtcgaggcaaggtgtctgaagggatggatttctcagatgacaatgctcgagctgttgtt
attgttgggattccctttcctaatatttatgatattaaagttgcccagaagaagaagttc
aatgatacaaatgagttatcgaagaaccttttaagtgggaatgaatggtattgtcagcag
gcctttcgggctctaaaccaggccgcaggtcgttgcattcggcacaggtatgactatgga
gctatcatcttcttagacgagcggctccagagagaaacaaatcgagcatacttatcaaag
tggttgcgcaagtctcttaggctctacagcaactttgaagaatcactagacagtttaaaa
tccttttttagagatgtgaagcttcatactggaataacaacaacttcatcacaagatctg
gtgggagacagtgaaaacataaagcccatggatacgaagatggaagcgaagaagaaaaac
aataaagtaacgaattccaaaggttatcaaaagaaagcagaagtgaaaaatgcatcattt
ggtgaaaaagctgctcggttgacccagccaccactttctgtttcaagatacgattctctg
tccagtggaactagaaccgaagtagttattgtaccggatgatgacgatgctgctacatgc
tgcaagtacatcgacatagagtgtaattctgaaaagcaatccagatcgtctagaacacat
ttggtggagtcgtatgcagatgatcctgagcttaccattgtcaaagaaacgcctgggatg
aattgcaggggcgagacaactactgaagtctactcaagagatgagtgtgcaagtccgagg
gcaacccagttatttagtgcatttcctcatcggacttcttctcatccaagatctgtccaa
aactgtttttctagccctactctcacatgttcagaagttgccactcccgagctaggaact
tcttctaaagtagacaaccaagaacctgaagcagaatcacgctggagtgccaatttaaat
tttgggaaaagaagaaagatcaattgtttgtcatcagtcagccgtctccatgagtttagc
aatcctgaaaaggactgccgaaaatttaagccatctctctcaacaccgaatagtcctgct
gtatcccgtatctcttctgatcacaacagagacgagggactacgattattctgctcacac
tgcaaaaacccattgggccttccagaaaatgatttactagtaaagtgctctcacatttca
acatcaaaaactcatttgatgtctcttctgaagaaggcttcggaacctgaagctttaaca
ccatcaagcgtggatgttttggtatctgacgcgccatcagtccatccacgtgtcctcaca
tctcaagaaagtgcttgcgggcaggggatttggtgcaaggaagacggatgcgtgttcaac
tctatattctgccccttctgtgaccaatcagacaactgtattggcgttcatgtggtggcc
acggatgaattgaatacgcagttccaaaataagatattattctactgggatcgtttggag
atcaagaaaattgaagcagagataaagaaagttgcaaaatcagaaaaggtttcgccttca
catggtgactcaagtgtggttgaaaacacaagtcccaacgtgtttgagaagtttgcatat
actccatcggttcaagcttctggaggttggaggtgcccgaaatcacggatgcgcctgcca
aagaaggcatag
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