Salvia hispanica (chia): 125209461
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Entry
125209461 CDS
T09851
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
shis01009
]
125209461
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125209461
Enzymes [BR:
shis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
125209461
Protein phosphatases and associated proteins [BR:
shis01009
]
HAD phosphatases
Fcp/Scp phosphatases
125209461
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
125209461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
NIF
DSRM_2
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
125209461
NCBI-ProteinID:
XP_047965020
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All DBs
Position
1:complement(16552818..16559780)
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AA seq
959 aa
AA seq
DB search
MYQKMVLMYEGARLLGEAELQPQEGFVWAQELKEIRICQYTSPSERCPPLAVLLTINSTG
ICFKLKSTVNMKNQNQDSPLSVLHATCLRENKTAVASFGGGEIHLVAMHSRKDQGQGPCF
WGFNVASSIYNSCLVMLNLRCLGIVFDLDETLVVANTMRSFEDRIEALQRKMNSESDPQR
VLGIQAEIKRYHDDRIILKEYAESDQVTDNGKIIKSQSEVVPALSETHQPIVRHLIRLQD
RNIILTRINPLIRDTSVLVRLRPAWEDLRTYLTAKGRKRFEVFVCTMAERDYALEMWRLL
DPGSNLINSRELLNRIVCVKSGSRKSLFNVFQDGNCHPKMALVIDDRLKVWDEKDQPRVH
VVPAFAPYYAPQAEANNSVPVLCVARNVACNVRGGFFKDFDDGLLQQITELAYEDDIRTV
PSSPDVSNYLVSEDDPSSLNGNKDSLGFDGMADSEVERRLKETISASSAASLPTANLDPR
LASALHYAASSSSFTVPLPAIPVPGPAMSFVNQQLLPQVAQLSQAEMTVQSSPAREEGEV
PESELDPDTRRRLLILQHGQDMREHPPSEPTFPARPPMQVSLPIGQGHGWFPVEEEMSPG
QLDRVAPPKEFILNADTIPIDKNRSPHPPFLHKVEPSIPPARVLHESQRLPREAFSREDQ
LRLNQAVSTFPSFSGQESPVAQSSLASKDIDLEAGQIDPYTETWPGALQDIAFKCGTKVE
FKQALVSGAELQFIVEVLFAGERIGRGIGRTRREAQRQAAEGSLLCLADKYMSYRRSDNY
VPGNGSRIVANQKENGFISDPNTFGYQSLSKEEGAPFSTVAASPRIRDPRIEPSKKPIGS
IAALKELCMMEGLGVAFQEHQPQFSANSGHKSEVYAQVEINGEVLGKGMGLTWDEAKSEA
AEKALGVLKSMTGQFPYRRQNSPRSMHGVSSKRMKQEFPRGPQRFSSSGRYSRNGSPIP
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagaaaatggtgttgatgtatgaaggggcgaggttgttgggagaggctgagttg
cagccgcaggagggatttgtgtgggcgcaggagctgaaggaaattcgaatttgtcagtac
acttcgccgagtgagaggtgcccgccgctcgccgtgcttttgacgataaactccaccgga
atatgcttcaaactgaaatctactgtcaatatgaagaatcagaatcaggactcgccgctt
tctgttttgcacgccacctgtctcagagaaaacaagactgctgtagcatcctttggtgga
ggggaaattcatttagttgccatgcattcgagaaaggatcaagggcaaggtccatgcttt
tgggggttcaatgtcgcatcaagcatatacaattcttgccttgttatgctgaatctcagg
tgtcttggcattgtgtttgatcttgatgaaacactcgtagtagctaacacaatgcggtcg
tttgaggataggatagaggctttgcagcggaaaatgaattcagagtctgatccacagcgt
gttttggggattcaggcagagatcaaacgatatcatgatgacagaattattttgaaggaa
tatgcagaaagtgatcaggtgactgacaatgggaaaattatcaaatcacagtctgaagtg
gttcctgctctgtcagaaactcatcaacctattgttcgccatcttatacgtcttcaagat
agaaatattattcttactcgtatcaatccactgatacgtgatacaagtgttcttgtgaga
ctgagacctgcttgggaggatcttagaacttacttgactgctaaagggagaaaacgcttt
gaagtttttgtttgcacaatggctgaaagggattatgctttagaaatgtggagacttctt
gatccaggatctaacttgataaactctagagagctcttgaatcgcattgtgtgcgtcaag
tctggttctaggaaatcactgtttaatgttttccaagatggaaactgccatcctaagatg
gcattggtaattgatgaccgcttaaaagtgtgggatgagaaagatcaaccacgagtccat
gttgttcctgcatttgctccatattatgctcctcaagctgaggccaacaacagtgtccct
gtgctctgtgttgcaagaaatgtagcttgcaatgtgagaggtggttttttcaaagatttt
gatgatgggcttttgcaacaaataactgagcttgcatatgaagatgatattcggactgtg
ccttcttcaccagatgtgagcaattacttagtttcagaggatgatccatcaagtttgaat
gggaataaagattcccttggttttgatggaatggcagattctgaggtggaaaggagactg
aaggagacgatttccgcttcttcagctgcttcgttgccaactgctaatttagacccaaga
ctcgcctcagcactccattatgctgcatcatcctcttcttttacagttcctctaccagca
ataccagtaccaggaccagctatgtctttcgttaatcagcaattattacctcaagtggct
cagcttagccaagcagaaatgactgtgcaaagttctcctgcaagggaagagggtgaggtt
cctgaatcagaactagatcctgatacaagaaggagactgttaattttgcagcacggtcaa
gacatgagagaacaccctccgagtgaacctacatttcctgccaggcccccaatgcaagta
tcactaccaataggtcagggccatggctggtttcctgttgaagaagagatgagcccggga
caactggaccgtgtggcaccaccgaaggaattcattttgaatgcagacactattcctatt
gacaagaatcggtctcctcatccacccttcctccacaaagtggagccttctatcccgcct
gctagagtgttgcatgaaagtcagagattaccaagggaggcattttccagagaagatcaa
ttaaggttgaatcaagcagtatccacttttccttctttttctggtcaagaaagtcctgtg
gcccaatcatctttagcaagtaaggatattgatctcgaagctggacaaatagatccgtat
actgagacatggcctggagcattgcaggacattgcatttaagtgtggaacaaaggtggag
ttcaagcaagccctggtatctggtgcagaacttcagttcatagtggaggtcttgtttgca
ggtgagagaattggtcgagggattggtagaacaagaagggaagcacaacgtcaggctgca
gaaggatctcttttatgtctggctgataaatatatgtcttatcgtagatctgacaactat
gtgcctgggaatgggagtaggattgttgctaatcaaaaagaaaatggcttcattagtgat
cctaacacttttggatatcagtcactgtctaaggaggagggtgctccattttctacagtt
gcagcatctccaagaattcgagatccaagaattgagccttccaaaaagccaataggttcc
attgctgcacttaaagagttgtgcatgatggagggccttggtgtagcattccaagaacat
caacctcagttttcagctaattcaggacataaaagtgaagtttatgcccaggttgaaata
aatggagaagtactgggtaagggaatgggcctaacatgggatgaagctaaatccgaggct
gctgaaaaagctctcggggtcttgaaatccatgacgggtcagtttccttacaggcgtcag
aattccccgagatcaatgcatggcgtgtcgagcaagaggatgaaacaagagttcccccga
ggtcctcagcgattttcatcctctggcagatactcaagaaacggatcacctataccgtga
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