Salvia hispanica (chia): 125209879
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Entry
125209879 CDS
T09851
Name
(RefSeq) uncharacterized protein LOC125209879
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125209879
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125209879
Surveillance factors
Other surveillance factors
125209879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_Tf2-1
GYF
Motif
Other DBs
NCBI-GeneID:
125209879
NCBI-ProteinID:
XP_047965413
LinkDB
All DBs
Position
3:31815481..31821861
Genome browser
AA seq
1443 aa
AA seq
DB search
MAESKLDLPEDLIGSKPSDQSWIPKASTGNDEDKGLMGSLDESKDQAASEIPLSPQWLYA
KPNEPKMEARGPSSLSLGTSADLNQKEVWRSDVPEEKKDWRKIAPEPDSARRWREEERET
GTFGRKDRRKMDRRVDNAPAREPTENRSLPATDRWHDVNNRSAGHETRRDSKWSLRWGPD
DKEKDSRGDKRTDVEKEESHNESQPFVSNSRSGPERETDSRDKWRPRHRMEGNPAGSGQR
TAPGFGPERGRVDGSNVGFTVGRGRSSASIGRPSSSSPIGAAQCDKNGKFVYPRGKLLDI
YRKQKLESSLAPVPDTFEEVPPITQLEAADPLAFVAPDAEQEAVLSDIWKGKITSSGALY
SALKTGRSGDSFSEVADVEFSNGRQVSFSADVTEDIPDNFDKSSADIHEASVDSIFYDTS
SKGGLLNEKTVNYEEQYEVLENMNEKELDIGRLQALNGAQYEQFWSDELHKTGSRANEYQ
LDRGIPPEELSLYYQDPQGEIQGPFLGVDIISWFEQGFFGADLPVRLEDAPDDSPFLELG
DVMPQLKFGHEYGSGNELSSNLEKSAVMEGASETCLQAGAPVPESVSSTVVDGSRWQLHE
FDNIPSHQGQSNVPDSHRHLPQHMYSQGKDFNDFGVQDEEIVFPGRPGSGGSTIGKTSRV
YGESASNSGNQSHLPHEMTESGLSNQNDNKMNPFRWSELASTHTRSEQAPPFSGGVQEKL
VNAGPGGRLSPFSAMANQAHAPEAWNDAFGSSSHSYQDVMDGRLSSRMDQEFSQFDIAEK
LLQQQLQQQHLQQHGVVPSLNTHMSDAMLEGAPSTKLMHHKQLGNQMGQDMEHLLALQRQ
QQRQIQLQQQQQLQQQEQFHQQQMLLKEQQQSQARQALLEQLLQSQMRESGRGQSRAALE
QALLKQQILNDRQQRSQFPSRHSDPSLEQLIQAKFGQVPHQGHQNDLVDLLSHGRHGQIH
PLDQQIIQQDQLHGRQLPLGLRQRLEMEERPINPGWSLDDAGNFHRNPSATNRAITAGFG
PLDFYSQQIPPPEEHLNLLERNLSVHDRLQHGLYEPGMLPFERSMSLPVGPAGVNRDVVN
SLARGLEMQEQIARIQSSGQGGGFSSGMFSQHINHPLHSNQFHESRMDTTEGHWSDNNGH
LPNDWMESRVQQHLHNERQRREIDAKRNTEDPSLWMSAGSNDDSSKRLLMELLQQKTGHA
SSDHTDMINGVPNERRPPSGHRHRSMSNQSFGALSDQESGFNNSFTVGSFNSDSGLPPQN
RRGEEKAKFVKEMHTQVQERIRERGEQVARHVNKGRKKVVFEPGDWVWVHLRKIRFPDKT
KGKLAPRGDGPFLVLERVNDNAYVIDLPGEYNVSCTFNVTDLSPFDVVGSSDLRTNPFQE
GEDDTTSRVGPMTRAMTRRLRDGLATFIQKSKREEPRRTDEPKLRIVLKNEGRPIGFKWK
SSY
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaagtaaactggatctcccggaggatctcatcggttcgaagccgtccgatcaa
tcttggattccgaaagcttccactggaaatgatgaggacaaggggttgatgggatcactg
gatgagtcaaaggatcaagcagcttctgagattcctctgtccccacagtggctgtatgct
aagccaaatgagccaaaaatggaagcccgtggcccaagttctctgtctcttggcacctct
gctgatttgaaccaaaaggaggtttggcgctcagatgttcctgaggaaaaaaaagattgg
agaaagattgctcctgaacccgacagtgctcgccgctggcgtgaagaagaaagggaaact
ggaacgtttgggcgaaaggatcgcaggaagatggacagacgggttgacaatgctccggcc
agagaacctactgagaacagatctttgccagcaactgacaggtggcatgatgttaataat
cgcagtgctggccatgaaacaaggcgtgatagcaaatggtctttaaggtggggccctgat
gacaaagaaaaggattctcggggggataaaaggacagatgtggagaaggaagagtcccat
aatgaaagccaaccatttgtttcaaatagtcgttctggtcctgagcgtgaaactgattct
cgtgataagtggaggcctcggcataggatggaggggaatcctgctggatctggtcaacgc
actgctcctggatttggacctgaaaggggaagagttgatggttcaaatgtgggctttact
gtagggcgtggtagatcttctgcttccattggaagaccttcatcatcttctccaattggt
gctgctcagtgtgataaaaatggaaaatttgtttaccccagaggcaaactacttgacata
tatcgtaagcaaaagctggagtcatcccttgcccctgtgccagacacttttgaggaagta
cccccaataactcaattagaggctgcagatcctttagcttttgttgctccggacgctgag
caagaggctgtactgagtgacatatggaagggtaaaataactagcagtggagccttgtac
agtgcacttaagacgggcagatctggtgatagcttttcagaagtggcagacgttgaattc
tccaacggaagacaggtttccttctctgctgatgtcactgaagatataccagataacttc
gataaatcatcagctgatattcatgaagctagtgttgatagcatattctacgatacttca
tcgaaaggaggtctgttaaatgagaaaactgttaattatgaagaacaatatgaagtttta
gagaacatgaacgagaaagaactggatattggccgtttgcaagctctaaatggtgctcaa
tatgaacagttctggtctgatgagctgcacaagactgggagcagagccaatgaatatcag
ctggatagaggaatccctccagaggaattgagtttgtattatcaggatcctcaaggggag
atacaaggaccttttcttggggtggacatcatttcatggtttgagcaagggttttttggg
gccgacttacctgttcgtttggaagatgcgcctgatgactcacccttccttgaattggga
gatgttatgcctcaattgaaatttggacatgagtatggtagtggaaatgagttgagttcc
aatttagaaaagtcagctgtaatggagggtgcgtctgaaacatgcttacaagctggtgct
ccagttcctgaatctgtttcttccactgtagtggatggatccagatggcagttacatgag
tttgataatatcccttcacatcaaggtcagtcaaatgtacctgacagtcatcgtcatctg
ccacaacacatgtactctcagggaaaagatttcaatgattttggcgtccaagatgaagaa
atcgtgtttcctggaagacctggtagtggtggcagtacgataggaaagacgtcgagagta
tatggggaatctgcctcaaatagtgggaaccagtcgcatctccctcatgaaatgacagag
tctggtttgtcaaatcagaatgacaataaaatgaatccttttagatggtctgagcttgcc
agtacacacacaaggagtgaacaggcacctccattcagtggaggcgtgcaggagaaactt
gtaaatgcaggacctggtggtagactttcccctttcagtgccatggctaatcaggctcac
gccccagaggcatggaatgatgcttttggcagcagctcacattcgtatcaagatgtcatg
gatggtcgcctatcttccagaatggaccaagaatttagccaatttgatatagcagagaag
ctattgcagcagcaacttcagcagcagcatctccagcagcatggtgtggtgccttccctt
aatacgcacatgagtgatgcaatgctagaaggggccccatctactaagttgatgcaccac
aaacagcttggtaatcaaatggggcaagatatggaacatctattagcccttcagcggcag
cagcagaggcagatccaacttcaacaacagcagcagctgcagcaacaagagcagttccat
cagcagcaaatgttgttgaaagagcaacagcagtctcaggcaagacaggctcttcttgag
cagttgctgcagagtcaaatgcgcgagtcaggtcgtgggcagtctcgtgctgctcttgaa
caggctttgttgaagcagcaaattctgaatgataggcaacaacgctcccaatttccttct
aggcattctgatccatcccttgagcagctaattcaagcaaaatttggtcaagtgcctcat
caagggcatcaaaatgatttagtggatctcttgtcacacggaaggcatgggcaaattcac
cccctggatcaacagatcattcagcaagatcagctgcatgggaggcagttgcctttgggg
ctaaggcagcgattggaaatggaagaaaggccaatcaaccctgggtggtcgcttgatgat
gctggtaattttcacagaaatccctctgccactaatagagccatcactgctggatttggt
ccattggatttttattcccaacaaattccacctccggaggagcatctcaaccttcttgaa
cgcaatctttctgtacatgacagactccaacatggtctttatgagcctggcatgttacct
tttgagcgttcaatgtcattgcctgtgggtcctgctggggtaaatcgtgatgttgtgaat
tcattggctcgtggcctagaaatgcaggagcagattgcacggattcaatctagtggtcaa
ggcggaggattctcgtcaggcatgttttctcagcatataaaccaccctttacattccaat
caatttcatgagtcacgaatggatacaacagagggccattggtctgataataatggtcat
ttaccgaatgattggatggagtctagagttcaacaacaccttcataatgaaaggcagagg
agagagatagatgccaaaagaaatactgaagaccctagtttgtggatgtcagctggatca
aatgatgacagttctaagcgattgcttatggagctactacagcagaaaactggccacgca
tcaagtgaccacactgatatgattaatggagtaccaaatgagagaaggccaccttcaggt
catcgccataggagcatgtcaaaccagtcattcggtgctctttcagaccaggaatctggt
ttcaacaactcattcactgttgggtcctttaattctgattcaggtctgccaccacagaat
cgacggggagaggaaaaggctaagttcgtgaaggagatgcatactcaagtgcaagagagg
atccgagagaggggagagcaagtagcccgccacgtgaacaagggacgcaagaaggtggtt
tttgaacccggcgattgggtgtgggtacatcttaggaagattcgtttccccgacaagacc
aagggcaagctagcccctagaggagatgggccttttcttgtgttggaacgcgtcaacgac
aacgcctacgtgatcgacttgcccggtgagtataatgttagttgcacgttcaacgtcact
gatttgagtccgtttgatgttgtagggagttcggatttgaggacaaatcctttccaagaa
ggggaggatgatacgacctcacgtgttggacccatgacgagagccatgacgaggcggctt
cgggatggactcgcaactttcattcaaaagtccaagcgggaggagcctaggaggacggat
gagccaaagttgaggattgtgctgaagaacgagggccgaccaattggattcaaatggaaa
tcttcctattga
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