Salvia hispanica (chia): 125209959
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Entry
125209959 CDS
T09851
Name
(RefSeq) protein LATE ELONGATED HYPOCOTYL
KO
K12133
MYB-related transcription factor LHY
Organism
shis
Salvia hispanica (chia)
Pathway
shis04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
125209959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shis03000
]
125209959
Transcription factors [BR:
shis03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
125209959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
125209959
NCBI-ProteinID:
XP_047965491
LinkDB
All DBs
Position
3:28453224..28458588
Genome browser
AA seq
747 aa
AA seq
DB search
MDPYSSGDDVIVKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
IRSHAQKFFTKLEKEAIVKGVPIGKSLDIKIPPPRPKRKPNNPYPRKTSAGTSASQVGVN
DGKISNPVSSSCQSKVTVELEKPSDDEKIGNSKEYYDKDDCFEAFTLKTAPCEFPSSANK
IASVSDAPKNSCTFRQYIPLSGEAMDQDETAASQVTTEAKGFQIEKSVNDQPLQDKLAFK
ISNDELKQSENDDTVGTADAPATQNYPRHVPVHILDGSLGMRAFDISQDTSYADSAFCQM
GGVPAPQNHFTNPAASGISEHYDSASKSSVHQSFPSYHPVFAPIQSQDDYQSFLHLSTTF
SSLIVSALSQNPLVYAAATFAATSWPSLNPEASVKPSTASAAAFQTRPVTSTPSLAALAA
ATTAAATAWWAAHGLLPLCAPYHPGFTSSPASASAAPMACSQDQAVNSEKRESSPDPALG
GQQLEPECSEALHKTQPVSKLPTLSSSDSEENEGVKLNVGLAASGTEKVEATGELKDVDK
SKSKKPADRSSCGSNTPSSSEVEADPTEKHAEGEEEKQTEEQEKQDDIEAAMNPFGDPFN
RRCRSTINVSDSWKEVSDEGRLAFQKLFSRQVLPQSFSPPHANKGNINCLRENEKAEKGL
QLDLNGTAWGSFSQKKGEEDGASVIGENKEKEGLYTGLGQCKLSARRTGFKPYKRCSVEA
KECGVSGNGHDEEKCPKRLRVEGEAST
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggacccttattcatcgggtgacgacgttatcgttaagacaaggaaaccttacacaatt
actaagcagcgcgagcgatggactgaagaggagcataataggtttctagaagctctcaag
ctctatgggcgtgcttggcagcgaatagaagaacatataggaaccaagactgctgtgcag
ataagaagtcatgcacagaagttttttacaaagttggaaaaggaggccattgttaaagga
gttccaattgggaaatctcttgacatcaaaatccctccaccacggcctaaaagaaaaccg
aataatccttatcctcggaagacaagtgcaggaacttctgcttcccaagtgggggtgaat
gatgggaaaatatcaaacccagtttcttcctcatgtcagagtaaagtaaccgtggaactt
gagaaaccttccgacgatgagaaaattggaaacagtaaagaatactatgacaaggatgat
tgctttgaggctttcactctcaagacagctccctgtgaatttccatcttcagcaaacaaa
atcgcatctgtatctgatgctcctaaaaactcatgtacttttaggcaatatatcccactt
tcgggagaagcaatggatcaggatgaaacagctgcatcccaggtcactaccgaagccaaa
ggatttcagattgagaagtctgttaatgaccagcctcttcaggataaactcgcgtttaag
atttcaaatgatgaactgaagcagtctgaaaatgatgatacagtgggaactgctgatgcc
ccggccacacaaaattatcctcgccatgtccctgtgcacattctggatgggagcttagga
atgagggcattcgatatctcccaggatacatcgtatgctgattctgcattttgtcagatg
ggtggggtccctgctcctcaaaatcatttcacgaatccagctgcttctggtatttctgag
cattatgatagtgcatcaaaatcttcggttcaccagtcattccccagttatcatccagtc
ttcgctcctatccaaagtcaagatgattaccagtcgtttctgcatttatcaaccacattt
tccagtcttattgtatctgctctatcacaaaatcctttagtctatgctgcagctaccttt
gcagcaacttcgtggccttctttgaatccagaagcttcagttaaaccatctacagcctca
gctgcggcgtttcaaacaaggcctgtaacttcgactcctagtttggctgcacttgctgca
gccaccacagcagcggcaactgcatggtgggcagctcatggcctacttcctttatgtgct
ccgtatcatcctggctttacgtcttctcctgcatcagcatcggcagctccaatggcttgc
agccaagatcaagctgtaaacagtgaaaaaagagagagcagtcctgatcctgccttaggt
ggtcaacaactcgaaccagaatgctccgaggctcttcacaaaacgcaaccagtttcaaag
ttgccaacattatcatcatcagattctgaagaaaatgaaggtgtgaaactgaatgttggc
ttagccgcttctggaacagaaaaggtcgaggctacgggtgagctgaaagatgtagacaag
tccaagagtaaaaagccagcagaccgttcttcatgtggatcgaacactccctccagcagt
gaagtagaagctgatcctacggaaaagcatgcagaaggggaagaggaaaaacagacagag
gaacaagagaagcaggatgatatagaagctgcaatgaatccttttggtgatccatttaat
cgacgttgtagaagcacaattaacgtcagtgactcctggaaggaagtatcggatgagggc
cggctggcgttccaaaaactcttctccagacaagtactgccccagagcttttcaccacct
cacgcgaataagggcaacatcaactgcctcagagaaaatgagaaagccgaaaagggactc
cagttagacctaaatggtacggcttggggttccttttcccagaagaaaggcgaggaagat
ggcgcatctgtgattggcgagaacaaggaaaaagaaggcctgtacactggactgggacag
tgtaagctatcagcgcgcagaactggattcaaaccttacaagaggtgttcagtggaggcg
aaagagtgtggtgtgtcgggaaacggccatgatgaagagaaatgccccaagagattgcgc
gtggaaggagaggcttctacttga
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