Salvia hispanica (chia): 125210173
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Entry
125210173 CDS
T09851
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125210173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125210173
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125210173
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125210173
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
125210173
NCBI-ProteinID:
XP_047965702
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All DBs
Position
3:complement(40579067..40579947)
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AA seq
265 aa
AA seq
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MAVVVRKVWQSNLDAEFRVIAGCLKQFRFASMDTEFPGTIYKPEGSVSTLSAAHVYALMK
KNVDALNIIQLGLTLSDDRGNLPTLGTPATFYVWEFNFRDFDCDYDRYNPESIAFLREQG
INFAEHKRRGINSRFFAAYFLRSGLGMGRAWVTFHGLYDLGFLIKILTRAPLPGHLPEFM
LLLRRYLGIQVYDLKPITRSFALHGGLDAVSRSLSVQRAAGKSHHAGSDSLLTMQVFARL
VLNSNYASASAMLRQFNYLLYGLTC
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggtggtgagaaaggtttggcagagcaatctggatgcggaatttcgtgtgatc
gcaggctgtttgaagcaattccggttcgcatcgatggacaccgaattcccgggcaccatc
tacaagccggaggggagcgtgtcgactctctcagccgcccatgtttatgcgttgatgaag
aaaaacgtggacgctttgaacatcatccaactcggcctcaccctctcggacgaccgcgga
aacctcccgactctcggcacaccggccacattctacgtgtgggagttcaacttccgcgac
ttcgactgcgactacgaccgctacaatccggagtccatcgcgttcctccgcgaacagggc
atcaacttcgcggagcacaagcgcaggggcatcaactcccgcttcttcgctgcctacttc
ctcagatcgggccttggaatgggccgggcctgggtcaccttccacgggctctacgacttg
ggcttcttgatcaagattctgacgagggcgccgctgcccggccatctcccagagttcatg
ctgctgctgcgtcgctatttggggattcaggtctacgatttgaagcccatcacccgctcc
tttgcgctccacggtgggctcgacgcggtgtctcggagtttgagtgtccagcgggctgct
gggaagagccatcatgccggctccgatagtctgctcactatgcaagtcttcgctcgactt
gtcctcaactccaactacgcctccgcttctgctatgcttcgccaattcaactatctattg
tacggactcacctgttag
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