KEGG   Salvia hispanica (chia): 125210221
Entry
125210221         CDS       T09851                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
shis  Salvia hispanica (chia)
Pathway
shis03013  Nucleocytoplasmic transport
shis03015  mRNA surveillance pathway
shis03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125210221
  09122 Translation
   03013 Nucleocytoplasmic transport
    125210221
   03015 mRNA surveillance pathway
    125210221
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shis03019]
    125210221
   03041 Spliceosome [BR:shis03041]
    125210221
Enzymes [BR:shis01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     125210221
Messenger RNA biogenesis [BR:shis03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     125210221
Spliceosome [BR:shis03041]
 Complex C
  Other components
   EJC/TREX
    125210221
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    125210221
SSDB
Motif
Pfam: Helicase_C DEAD ResIII Cas3-like_C_2
Other DBs
NCBI-GeneID: 125210221
NCBI-ProteinID: XP_047965747
LinkDB
Position
3:complement(42146380..42148659)
AA seq 241 aa
MQMLTCIIFCSVYRGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGM
DVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALVLCHTRELAYQICHEFERFSTYLPDI
KVAVFYGGVNIKIHKDLLECRLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMP
DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMP
S
NT seq 726 nt   +upstreamnt  +downstreamnt
atgcagatgttaacttgcattattttctgttctgtgtacaggggatatgtggggatccac
agttcaggattcagggacttcctcttgaagccagagcttttacgtgctattgtcgactcg
ggatttgagcacccgtcagaagttcaacatgagtgtattcctcaagctattcttggaatg
gatgtcatctgccaagccaaatctggtatggggaaaactgctgtgtttgtgctttcaaca
ttacagcagatcgaaccaattgcaggccaagttgctgcgcttgtcctgtgtcatacaagg
gaattagcttaccagatttgtcatgagtttgaaagattcagtacatacttaccagatatc
aaagtagctgttttctatggcggtgtcaacataaaaatacacaaagatcttctggagtgc
agattaactcggtacaagagtttcaaagaaggccataaaaggattttggtagctacagat
ttagttggtagaggaatcgacatagagcgagttaacattgtgatcaactacgatatgccg
gattctgcagacacttatctacacagggttggcagagcaggaaggtttggcaccaaaggg
ctcgctataacatttgtttcatctgcatctgattcggatgttctcaatcaagttcaggag
aggtttgaagttgatatcaaggagcttcctgagcaaatcgatacatcgacatacatgccg
tcctaa

DBGET integrated database retrieval system