Salvia hispanica (chia): 125210501
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Entry
125210501 CDS
T09851
Name
(RefSeq) rhamnogalacturonate lyase-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
125210501
Enzymes [BR:
shis01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
125210501
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
NOMO1-like_2nd
CarbopepD_reg_2
SpaA
Motif
Other DBs
NCBI-GeneID:
125210501
NCBI-ProteinID:
XP_047966006
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All DBs
Position
3:complement(53405322..53408813)
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AA seq
641 aa
AA seq
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MVVDLASQDEGVTLVERGNHVEMSNGIVSITLTLPGGSITNITYQGSDNLLQTQDKETDR
GHWDVVWNEASSSIGKTDNLEGTDYKVISQSENQIEISFTRTWSPPSSLAPLNIDKRYVM
LRGSPGFYTYAILERIKGWPSFLIQEGRIVFKLQENKFHYMAMSDERQRFMPMYEDRESG
EPLAYKEAVLLKNATNPEFNGEVDDKYLFSSDNIDNKVHGWVSNDNVPIGFWMITPSNEF
RTGGPIKQDLTSHTGPILLSMFISRHYIGTDIDVKFETQDNWKKVIGPNFIYLNSNASAL
ADPSILWNDAKLRLQKEEADWPYNFLHSIEYLKSDQRGSITGQLLVHDRLVSEQPMPAGS
AYVGLAPPGAAGSWQIENKGYQFWTRTDEEGNFEIKNVIPGTYNLFGWVPGVVGDFKHVS
DITINPGSSVKVENLVFDPPRNGPTLWEIGTPDRTAAEFFIPDPNPKFKLHPYKLPIQKF
RQYGLWDRYTDLYPKNDLVFTIGTSNYKTDWFFAHVTRKMGETEYTTTTWQIVFNLNTVD
KQANYTLQLALASATALDLQVRFNDQISPPHFETGFIGRDNALARHGIHGLYRFYSIPVQ
GQKLVVGENKLFLTQANRNGSKLGPFNSIMYDYIRLEGPTP
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggtggtggatttggcatctcaggatgagggagtaacacttgttgaacgtggtaatcat
gttgagatgagtaatggaatagttagcatcacattgaccttacccggtggttcaatcacc
aatataacatatcaaggaagtgacaatttgcttcaaactcaagataaagaaacagacaga
gggcattgggacgttgtttggaacgaggcatcaagcagcattggcaaaactgacaacttg
gaaggaacagattataaggtgatatcgcaaagtgaaaatcaaattgagatttcatttacc
agaacatggtctcctcctagctcactcgccccattaaacattgataaaagatatgtgatg
ctgcgtgggtcccctggattctatacatatgctatactcgaacgaattaaagggtggcct
tcttttcttatacaagaaggaagaatcgtgttcaagcttcaggagaataagtttcactac
atggctatgtctgatgaaaggcaaaggtttatgccaatgtatgaagatcgtgaatctggc
gaaccacttgcttataaggaagctgttctcttgaaaaatgcaactaatcccgaattcaac
ggagaggtggacgataaatacttgttctcaagcgacaacattgacaataaggtccatgga
tgggttagcaatgacaatgtcccaatagggttttggatgatcactccaagcaatgaattt
cgaacaggtggcccaatcaaacaagatctcacatctcatactggtccaattctcctctct
atgttcatcagcagacattatattgggactgacatagatgtcaagtttgaaactcaagac
aattggaaaaaagttattggtcctaattttatctatctcaactccaatgcttctgctcta
gcagatccttctattctttggaatgacgctaaactaaggttgcaaaaggaggaagcggat
tggccgtataatttcctacattcgatcgaatacctcaaatccgatcaacggggatctatt
accggtcaattgcttgttcatgatcggttggttagtgagcaacctatgccggctggctca
gcttatgtgggattagctccacccggggcggctgggtcatggcagattgagaataagggg
tatcaattttggacacggacggatgaagagggaaatttcgagatcaagaatgtgattccg
ggaacctacaacttgtttggatgggttcctggagttgtaggagactttaaacatgtatcc
gacatcaccatcaaccctggatctagtgtcaaggttgaaaacctggtgttcgatccccca
agaaacggtccaactttgtgggagattgggactccagatcgcactgctgccgagtttttc
attccggatcctaatccaaaattcaagcttcatccatacaaacttcccattcaaaagttc
cgacaatatgggctttgggatcgctacaccgatttataccctaaaaatgaccttgttttc
acaattgggactagcaactataaaacagattggtttttcgcacatgttacaaggaaaatg
ggagagacagaatatacaacaacaacatggcaaatagtgttcaacctcaataccgtcgac
aaacaagcaaattacactctccaattggccctcgcatcagccactgcactagatttacaa
gtacgtttcaacgatcaaatatcccctccacatttcgagacgggattcataggccgtgat
aatgcattagcaagacatgggattcacgggttgtaccgtttctacagcatcccggtgcaa
ggccaaaaacttgttgtgggagagaacaagttattcttaacacaagcaaataggaatggt
tcaaagcttggaccctttaatagtatcatgtacgattatatacgtttagaaggcccaacg
ccataa
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