Salvia hispanica (chia): 125210882
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Entry
125210882 CDS
T09851
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125210882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125210882
03012 Translation factors [BR:
shis03012
]
125210882
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125210882
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125210882
Translation factors [BR:
shis03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125210882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
AAA_16
ATPase
T2SSE
AAA_23
Motif
Other DBs
NCBI-GeneID:
125210882
NCBI-ProteinID:
XP_047966458
LinkDB
All DBs
Position
3:complement(34452960..34460288)
Genome browser
AA seq
1106 aa
AA seq
DB search
MHSRVRALLARAASKSAALSSTLYLRNSRVVAVTDYTAFANGYRWDCEYHSPSSPEADMY
VWKWKLSALLLNDKDQEIIYRDKRDECHLELISGLAKHMGLYCQRYGEAIVASKVPLPNY
RPDLDDMRPQREVVIPLSVQSRVESLLQEHLDRTSLNSKKGGQISNEMESSNPVENADTA
EHADPFLDASVMEKVLQRRSLRLRNMQRTWQESSEGRRMLDFRKSLPAFREKERLLQEIV
TNQVVVISGETGCGKTTQLPQYILEANIESGRGAFCNIICTQPRRISAMTVAERVSAERG
EPLGESIGYKVRLEGTKGKNTHLLFCTTGILLRRLLSDRNLDGVTHIFVDEIHERGMNED
FLLIVLKDLLPRQRDLRLILMSATLNADLFSNYFGGAPMIHIPGFTYPVRVCFLEDILEM
TGYEITLSNQLDDHAQEKLRKTQRQLAPQKRINQITTLAEDAMSKANFENYSSRVQESLW
YWIPDFVGFNLLKAVLCHITRKERLGSVLVFMTGWEDISCLKNQLKAHPLLGDPNRVLLL
TCHGSMETSEQKLIFERPPPNVRKIVLATNIAEASITINDIVFVVDCGKAKETTYDALNN
TPCLLPSWISQASARQRRGRAGRVQPGECYHLYPRCLYDAFAEYQLPELLRTPLNSLCLQ
IKSLQVESIGDFISASLQPPEPLAVQNAVDYLKMIGALDENEKLTHLGKFLSVLPVDPNL
GKMLIMGAIYCCIDPILTIVAGLSARDPFLLPRDKNDSGSAKLRFSAEDYSDHIALVRAY
DGWKNAKRKGSARKYCGRNFLSRQTLQAIHSLRKQFTNILKDAGLLDTDAPTNNRLSHNH
SLVCGVICSGLFPGIVSVVPQNGTMSFKTMVDGPVFLNANSVNARDDTIQYPWLVFGEKV
KVHNVFIRDSTGVSDSILLLFGGKLECGATGGHLQMLEGYIEFFMCPSLAECYLKLKEEA
DKLLVQKLEHPSMDIHKEGKYLMLAIQELLSGDQCEGRFVFGRYSKKPTESHHKERYTGL
LQTLMMGDGPLSPKYKTKHIKTKEYRALAEFKANAVSRETEEKQALSEKDGDVLAWLTRT
SENSHVKDFNSPLDVTDIKAHSTLRK
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgcattcccgggtaagggcgttacttgcacgcgccgccagcaaatccgccgctctttct
tcaactttgtatttacggaactcccgagttgtagctgtcaccgactacaccgcctttgcc
aatggatatagatgggattgcgaataccactctccgtcatcaccagaggcggatatgtat
gtgtggaaatggaagctcagcgcgttgttactaaatgataaagatcaagagatcatttat
cgtgataagagagatgagtgtcacttggaactaatatccggccttgccaaacacatgggg
ctttactgtcaacgatatggggaagcgattgtggccagcaaggtccctcttcccaactat
aggcctgatctggatgatatgcggcctcagagggaggttgtcatcccattgagcgtgcaa
agcagggttgagagtttgcttcaggaacatcttgatagaacaagcttaaactccaaaaag
ggcggtcagatttcaaacgaaatggagtccagcaatccagttgaaaatgctgatactgct
gaacatgcagacccatttcttgatgcttctgtcatggagaaggttttgcaaagacggagc
ttgcgattgcgtaatatgcaaagaacttggcaggaatcatctgaaggaagacgaatgctg
gattttaggaaatccctccctgcatttagggagaaggaaaggctccttcaagaaattgtg
acgaatcaggttgtggtgatttctggagagactggttgtggtaagaccactcaactccct
caatatattttggaggcaaatatagagtctggcaggggagcgttttgtaacataatctgc
acacagccccgaagaatatcagcaatgactgttgcagaaagagtttctgctgagcgggga
gaacctcttggtgaatcaattggatataaagtgcgattagagggaacgaaaggcaagaat
acacatttgcttttctgtaccactggaattttgctccgaaggctcttgagcgatagaaac
ctagatggtgtaactcatatttttgttgatgaaattcatgagcgaggcatgaatgaagat
ttcttgttgattgtcttgaaggatcttcttccacgtcaacgggatttgagattaatcttg
atgagtgccactctgaatgctgatctattttctaattatttcggtggagcacctatgatt
catattccgggcttcacttatcccgtgagagtctgttttctggaagatatactggaaatg
acgggatatgagataactttatccaaccaattagatgatcatgcccaagagaagcttcgg
aagacacaaagacaacttgcaccacagaaaagaataaatcaaattaccactcttgctgag
gatgctatgagtaaagcaaattttgaaaactatagctctagagtacaagagtcgttatgg
tactggataccggactttgttgggttcaacctcttaaaggctgtactgtgccacataact
cgcaaggaacgccttgggtctgtgttggtatttatgaccgggtgggaggatattagttgt
ttgaagaatcaattaaaagctcaccctctcttaggtgatccgaatagggtcctgctgctt
acatgccatggctcaatggaaacttctgaacagaaactcatatttgagaggccacctccc
aacgtacgcaaaatagtgcttgctacgaatatagctgaggcaagtattacaatcaatgac
atagtttttgtcgtcgactgtggaaaagcaaaggaaacaacttatgatgctctaaataac
acaccgtgtctactaccttcatggatatcccaagcttctgctcggcaaagaaggggtagg
gctgggcgtgtacagccaggtgagtgctaccacctgtatccacgatgtttgtatgatgct
tttgctgaatatcaactccctgaacttttaagaactccattgaactctctctgcttgcaa
attaaaagcttacaagttgaaagtattggggattttatctctgcttctcttcagccacct
gaaccactggctgttcaaaatgctgttgattatttgaagatgattggtgctttagatgaa
aatgagaagcttactcatcttggaaagttcttgtctgtgcttccggtggatcccaatctg
gggaaaatgctaatcatgggtgctatctattgctgcattgatcctatactgacaattgtc
gctggtctcagtgcccgggatccttttcttttgcctcgagataaaaatgattctggatcg
gccaagctgagattctcagcagaggactatagtgatcatatagcacttgttcgtgcatat
gatggatggaaaaatgctaaaagaaaaggatcagcacgcaagtattgtgggagaaacttc
ctctcccgccaaactctgcaagctatccattctcttcgtaaacaattcactaacatcttg
aaagatgctgggttgcttgatacagatgcaccaactaataacagactaagtcacaatcat
tcgttggtttgtggtgtaatatgttctggcttatttcctggcatcgtgtctgtagtgcct
cagaacggtacaatgtctttcaaaacaatggttgatgggccggtctttctcaatgcgaat
tctgtgaatgcacgagatgatacgatacaatacccatggttggtatttggtgagaaggtc
aaagtccataacgttttcatacgcgattcaactggagtatctgattctattcttctcctg
ttcggtggtaaactggagtgcggtgctacgggaggacatctgcaaatgttggaaggatac
atcgaattcttcatgtgcccgagcttagcagagtgctatctgaaactcaaggaggaggca
gataaactattagtacagaagctcgaacatcccagcatggacatccacaaggaaggcaag
tacctaatgcttgccatccaggagctattgtcgggcgaccagtgtgaagggaggttcgtc
tttggtcgttacagcaagaaacccaccgaatcccaccacaaagagaggtacacgggcttg
cttcagacactgatgatgggagacggcccattatctcccaagtacaaaaccaagcatatc
aaaacaaaagaataccgggcgctggccgagttcaaggccaatgcagttagtagggaaacc
gaagaaaaacaagcactatcggagaaagatggtgacgtattggcatggttaacccgaaca
tccgagaatagtcatgtcaaagatttcaattctccgcttgatgtcacggacataaaagcg
cattccacgttaaggaagtaa
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