Salvia hispanica (chia): 125211900
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Entry
125211900 CDS
T09851
Name
(RefSeq) probable pectate lyase 22
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis00040
Pentose and glucuronate interconversions
shis01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125211900
Enzymes [BR:
shis01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125211900
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
VWC2L_C
Motif
Other DBs
NCBI-GeneID:
125211900
NCBI-ProteinID:
XP_047967816
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Position
3:21888793..21890440
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AA seq
403 aa
AA seq
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MSIVLLLVCLTLLSHASTFSARPVMHDASQPSRWRSMKNMTEGAGAGSATCRTGNPIDDC
WRCDPDWETNRKVLADCGIGFGRDAIGGRDGEFYVVTTEEDDPREPRQGMLRHAVIQNEP
LWIIFERDMSITLKEELMMNSYKTIDGRGFNIEMANGPCITIQGVTNIIIHGIYIHDCVQ
GGNAVVTDGPQHYELRGISDGDGISIFGARDVWIDHCTLSHCHDGLIDIVSGSTAITVSN
NYMFRHNEVMLMGHSDDYVADKKMQVTIAFNYFGEGLVQRMPRCRHGYFHVVNNVYTGWE
MYAIGGSANPTINSQGNVFIAADDDHTKEVTKRESSPGDEEWKSWNWRSEGDLLLNGARF
IASGNATAATYAKASSMVARPASLLTSIIPAAGVVNCRIGKPC
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatagtcttgttactcgtgtgccttaccctgctctcgcatgcttccacattttcc
gcacggccggtgatgcatgacgcgtctcaaccttcccgatggagatcaatgaagaacatg
acagaaggggcaggggcagggtcggccacgtgcaggacaggcaacccgatcgacgactgc
tggcggtgcgacccagactgggagacgaatcgaaaagtgctagcagactgcgggatcggg
ttcgggcgcgacgcgatcggggggcgggacggggagttttacgtggtgacgaccgaggag
gacgacccgagggagccgaggcaggggatgctgaggcacgcggtgatccagaacgagccc
ctttggataatcttcgagcgcgacatgagcatcaccctgaaggaggagctgatgatgaac
tcgtacaagaccatcgacgggagagggttcaacatcgagatggccaacggtccgtgcata
acaatacaaggtgtgactaacattatcattcacggtatttacatacacgactgtgtccag
ggcgggaacgccgtggtgacggacggcccgcagcactacgagctgcggggcatctctgac
ggggacgggatctcgatatttggagcccgcgacgtgtggattgaccactgcaccctctcg
cactgccacgacggactcatcgacatagtctccggatccacggccatcacggtctccaac
aactacatgtttcgccacaatgaagtgatgcttatgggacatagcgatgattatgtagca
gataagaagatgcaagtcaccattgcttttaactactttggggaaggtctggttcaaaga
atgcccaggtgtaggcatggctactttcatgttgtgaacaatgtatacactgggtgggag
atgtacgcgatcgggggaagtgctaacccgacgatcaatagccagggtaatgtgttcatc
gcagcagacgacgatcatacaaaagaggtgacgaaaagggaaagcagcccgggagatgag
gagtggaagagctggaattggagatcggagggagatcttttgttgaatggagcgcgattc
atagcttctggaaatgcaacagcggcgacctacgctaaagcatcgagcatggttgcaaga
ccagcttcgcttttgactagtataataccggctgctggagttgtcaattgcagaattggc
aaaccctgctag
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