Salvia hispanica (chia): 125212283
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Entry
125212283 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125212283
03041 Spliceosome [BR:
shis03041
]
125212283
03036 Chromosome and associated proteins [BR:
shis03036
]
125212283
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125212283
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125212283
mRNA cycle factors
Common to processing body (P body) and stress granule
125212283
Spliceosome [BR:
shis03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125212283
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125212283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125212283
NCBI-ProteinID:
XP_047968357
LinkDB
All DBs
Position
3:complement(29402489..29406775)
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AA seq
621 aa
AA seq
DB search
MPATWSESVEKAPTGGGVGVTSHASRSTYVPPHLRNRPPSASTDPAPSAAVSYAGTLAGN
ESQGQGGAAVGGFQSYGPRNDRGGGGGLSRGGGGGGGSAWNNRNGGWDRGREREANPFQD
DGVPEPEYAVQENSGINFDAYEDIPVETSGKDVPPPVNTFAEIDLGDALNMNIKRCKYVK
PTPVQRHAIPISLTGRDLMACAQTGSGKTAAFCFPIISGIMKSGQSAQRQPRMPRMAFPL
ALILSPTRELSMQIHEEAKKFSYQTGVKAVVAYGGAPINQQLRELERGVDILVATPGRLV
DLLERARVSLQNIRYLALDEADRMLDMGFEPQIRRIVQQMDMPPPGVRQTLLFSATFPKE
IQRLAADFLSNYIFLAVGRVGSSTELILQRIEYVLETDKRSHLMDLLHAQRANGVQAKQA
LTLVFVETKKGADSLEHWLCINGFPATSIHGDRTQQEREYALRSFKSGKTPILVATDVAA
RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDGNASLAKPLADLMQE
ANQEVPAWLARFAARSSFGGGRNRRGQGGGGRFGGRDFRKDSSYNRGGMDMYGGGSNMNN
GYNHSGGYGGGFGSAVTSAWD
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctacatggtctgaatctgttgagaaggctcccaccggtggtggtgtaggggtt
acttctcatgcttctagaagtacttatgttcctccgcatcttagaaataggcctccttca
gcctcaactgatcctgccccctcagctgcagtttcctatgctgggactttggcgggaaat
gaatcccagggacagggtggtgcagctgtaggtggatttcagtcgtatggtcctagaaat
gatagaggtggaggtggtggtctcagtcgcggtggtgggggtggaggtggtagtgcttgg
aacaatagaaatggtggttgggatcgtggcagggaaagagaggctaatccttttcaagat
gatggagttccagaaccagaatatgcagtacaggaaaattcagggatcaattttgatgct
tatgaggatattccggtggagactagtgggaaagatgtcccacctcctgtgaatacattt
gccgagattgatttgggtgatgctttaaatatgaatattaagaggtgcaagtatgtgaaa
cctacacctgtgcagcggcacgccataccaatatcactcactgggcgggatttgatggct
tgcgctcaaactggttcaggaaagactgcagcattctgtttcccaataattagtggaatc
atgaaaagtggccaatctgctcaaagacagccacgtatgccgcgtatggcatttccgctt
gctctcattctttctccaacaagggagctttctatgcagattcatgaagaagctaagaaa
ttttcatatcaaactggcgtcaaggctgttgttgcttatggtggtgcacctatcaatcaa
cagcttcgagaacttgaaagaggtgtggacatacttgttgcaacacctggacgtttagtt
gatttgttggaaagggctagagtctcgttacaaaacattaggtacttagcccttgacgaa
gcagatagaatgttggacatgggttttgaacctcaaataaggagaattgtgcaacaaatg
gacatgcctccacctggtgtaagacagacattgctatttagcgccacatttcctaaggag
atccagagactagctgcagattttctttcaaattacatatttctggctgttggaagagtt
ggttctagcactgaattgatcctccaaagaattgaatatgtgcttgagactgacaaaaga
agtcacctgatggaccttctccatgcacaaagagcaaatggcgttcaggccaagcaagca
ctgacattggttttcgttgagacaaagaagggagctgattcgcttgaacactggctttgc
attaatggctttcctgccacttccattcacggtgaccgaacacaacaggagcgagaatat
gctttaagatcattcaaaagtggcaaaactccaattctggttgcaactgatgtggcagca
cgtggccttgacatccctcatgttgcacatgtcgtcaacttcgatcttcctaatgacatt
gacgactatgtccaccgtattggacgcaccgggcgtgctggtaaaacaggactggccact
gcttttttcaacgatggcaatgcctcattggcaaaaccattggctgatttgatgcaagaa
gcaaatcaagaggttcctgcttggctggcacgctttgctgctcggtctagctttggaggt
ggtaggaaccgccgagggcaaggtggcggaggaagatttggcgggcgtgatttccgcaaa
gattcctcctacaatagaggtgggatggacatgtatggtggcggcagcaacatgaacaat
ggttacaaccattctggcggatatggtggaggctttggctctgctgtgactagcgcctgg
gactaa
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