Salvia hispanica (chia): 125212490
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Entry
125212490 CDS
T09851
Name
(RefSeq) single-strand DNA endonuclease 1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shis03400
]
125212490
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
125212490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Chromo_SEND1
XPG_I
XPG_N
Chromo_2
Nebulin
Motif
Other DBs
NCBI-GeneID:
125212490
NCBI-ProteinID:
XP_047968636
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All DBs
Position
3:complement(34170557..34174841)
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AA seq
617 aa
AA seq
DB search
MGVKNLWDILETCKKTLPLHHLQNKRVCVDLSCWMVQLQNVNRSHCPLKDKLYLKSLFHR
LRALLALNCSLIFVTDGSIPGIKLSTYRRRLNTGNEAMPIVHAKHTSENVSSLKRNMGSE
FSCMIKEAKLLGIALGIQCLDGIEEAEAQCALLNAESLCDGCFTSDSDAFLFGARTVYRD
ICLGEGGYVTCYEMDDIERELGFGRDSLITLAILLGSDYTQGIRGVGPEHACQLVRAAGD
SSVLQRLASEGLSFAKKPKNSKKKGKITEGENKENYDDNKRDFNGNESDFPMDNQFLQVI
NAYMKPKCHSADSDAVNRALASYQVNNNQLHQICAQYFDWTPEKTDEYILPKIAERNLRR
FANLRVTSSKLDLHPPINEIPVKCPISRIIKQRKIQGRDYFEVSWEDMDGVEASVVPADL
VQSACPEKIMEFRELKAQKQKPSRKPRQKQKRDTKELDRKLQQLVDEIEKESTTSNAIGE
TKIDAPTSRQKTVDIEEIDGKLQELIIDTEKESSGSGSSNPRGGMLQQQRMMHFGSSIGG
CSAAAEVIDLISPLPPRRCPVSKPRDCVEVIELSDTENDATPQHARKMVRDQVSTAYDDY
LYKKSDNCASKSSVILL
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgaagaatctgtgggatatcttggaaacttgcaagaaaactctcccccttcat
catctccagaacaagagggtgtgtgtggatttgtcgtgttggatggttcagcttcaaaat
gtgaacagatcccactgtccattgaaagacaagctctatttgaagagtctcttccaccgc
ctcagagccctccttgctttgaattgcagccttatcttcgttactgacggctccattcct
ggtatcaaattatctacatataggcgccgcttgaatacaggaaatgaggcaatgccaatt
gtacatgccaagcatactagtgaaaatgtatcatctttgaaaagaaatatgggatctgaa
ttttcttgcatgatcaaagaagccaagttgctcggcattgcccttgggattcaatgccta
gatgggattgaggaggctgaagctcaatgtgctttgctgaacgcagaatcattatgtgat
ggatgttttacatcagattccgatgcttttctgtttggtgcgagaacagtttatagagac
atttgtttgggagaaggtggttatgttacttgctatgaaatggacgatatcgagagagaa
cttgggtttggaagggattccttgattactcttgctattcttctagggagcgattacacc
caaggaattcgtggggttgggccggagcatgcttgtcagcttgtgagagctgctggtgat
tcgtctgttcttcagcggcttgcatcagagggcttgtcatttgcaaagaagccaaaaaac
tcgaaaaagaagggcaaaattactgagggtgaaaataaagagaattatgatgataacaag
agggattttaatgggaacgaatctgattttccaatggacaatcagtttttgcaagtgata
aatgcatacatgaagcccaagtgtcattcagcagactcagatgcagtgaacagggctctt
gcttcctatcaagtcaacaacaaccagctgcatcagatttgtgctcaatatttcgactgg
acgcctgaaaagacagatgagtacatccttccgaagattgctgaaagaaacttgaggcga
tttgctaaccttcgcgtcacttcttccaaattagacctccatccgccaatcaacgagatt
ccagtgaaatgtcctatatctaggattatcaagcaaagaaaaatccagggaagggactat
tttgaggtttcgtgggaagacatggatggagtcgaagcatcggttgtacctgctgatctt
gtgcagagtgcttgccctgaaaagatcatggagttccgggagctaaaagctcagaaacag
aagcccagtcgtaaaccaagacagaaacagaaacgagacacaaaggaactcgacagaaag
ctccaacaactggtggacgagattgagaaggagagcaccacctcgaacgccattggagag
acgaaaatagatgctcccacatcgagacagaagacggtcgacatcgaggaaatcgatgga
aagcttcaggaactgatcatcgacacagaaaaggagagcagtggtagcggctcgagtaat
ccaagaggaggaatgcttcagcaacagaggatgatgcactttggtagcagcattggtggt
tgctctgctgctgcagaagttattgatcttattagtccgctgccgccacgacgatgtccg
gtgtcgaagccccgagattgtgttgaggtgattgagttgagtgatacggagaatgatgcc
acacctcaacatgcgagaaaaatggttagagatcaagtctctacagcatatgatgactac
ctttataaaaaatctgataactgtgcttccaaaagtagtgtgattttgctttga
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