Salvia hispanica (chia): 125212535
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Entry
125212535 CDS
T09851
Name
(RefSeq) probable pectate lyase 13
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis00040
Pentose and glucuronate interconversions
shis01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125212535
Enzymes [BR:
shis01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125212535
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
125212535
NCBI-ProteinID:
XP_047968693
LinkDB
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Position
3:38776472..38779903
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AA seq
492 aa
AA seq
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MLLSRMYILLLLLCLICSSYVEAATSFNLTLSHQHPNPDFVALQVRRSVNESLSKRRQIL
ETPLSSKAQSQCLTGNPIDDCWRCDSNWGNNRQRLADCAIGFGQSAMGGKGGRFYEVTDS
SDHDTVSPTPGTLRYAVIQDEPLWITFKYNMVIKLKHELIVNNYKTIDGRGANVQITGNG
CITLQYVSNVIIHNVHIYNCKPSGNTDIRSSPTHVGHRGKSDGDGISIFSSRNIWIDHCT
LSHCTDGLVDIIMGSTAITVSNNYFSDHNEVMLLGHDDKYLPDSGMQVTIALNRFGPGLV
QRMPRIRRGYVHVVNNDYFQWKMYAIGGSASPTVNSEDNRFTAPADPSAKEVTRHEDTSE
GGWADWNWRTDGDLMVNGAFFVSSGEGATMQYAKASSFNPKSASQIEQLTMNAGVLGGTR
DNSVSSYGGGSTTVTGGGSGGGGSSGGGGDYFGMIFAGSAAVRGPSPPTILFLSSLIILM
LYISSSIVNGLV
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgctgctttctcgcatgtacattctcttgctgctgctatgtctcatttgctcttcctat
gttgaagctgccacttccttcaatctcaccctctctcatcagcaccccaaccctgatttt
gtagctctacaagtcagaaggagtgtgaatgaatcgctatcgaaacgccgccagattctt
gaaacacccttgagtagtaaggcacagtcacaatgcctgaccgggaaccccatagacgac
tgctggcgatgtgactccaactggggaaacaaccggcagcgcctggctgactgcgctata
gggttcggccagagtgcgatggggggcaaagggggccgtttctatgaggtgacggactcc
tctgatcacgacacagtcagtccgacccctggcacccttcgttatgctgtcatccaagac
gagcccctctggatcaccttcaagtataacatggtcatcaagctcaagcacgagctgatt
gtcaacaactacaagaccatagatgggcgtggtgccaatgtgcagatcacggggaatgga
tgcatcacattgcagtatgtgagcaacgtcatcatccacaacgtgcacatttacaactgt
aaaccgtctgggaacactgatattaggtcgagccccacccatgttggccacagggggaag
tcggatggtgatggcatatcaatcttcagttcgaggaacatatggatcgatcattgcacg
ctgtcacattgcaccgatggattggtggacatcatcatgggatctacggctattactgtg
tcgaataactatttctctgatcataatgaggttatgctgctcgggcatgatgacaagtac
ttgcccgactcgggaatgcaggtcacaatagccttgaacaggttcggaccggggctcgtg
cagaggatgccaagaataaggaggggctacgtccatgtggtgaacaacgactattttcag
tggaaaatgtacgcgattggaggcagtgctagcccgactgtgaatagtgaggataaccgc
ttcactgcaccagctgatccaagtgcgaaagaggtgacgagacatgaggatacgagtgag
ggggggtgggccgactggaattggaggacggatggggacttgatggtgaacggtgcattc
tttgtgtcatccggtgaaggggctacgatgcagtatgccaaggcctcgagtttcaaccct
aaatcggctagccaaatcgaacaactaaccatgaatgccggtgttcttggtggcacaagg
gacaatagcgtcagctcatatggtggcgggtccaccaccgtgacaggcggcgggagcggc
ggcggagggtccagcggtggtggaggtgactattttgggatgatatttgcgggcagcgcc
gccgtaagagggccatcgccgcccaccattttgtttttatcttccctaattattttaatg
ttgtatatttcctcctccattgttaatggtttggtatga
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