Salvia hispanica (chia): 125213049
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Entry
125213049 CDS
T09851
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
shis
Salvia hispanica (chia)
Pathway
shis04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125213049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125213049
03009 Ribosome biogenesis [BR:
shis03009
]
125213049
04131 Membrane trafficking [BR:
shis04131
]
125213049
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shis04147
]
125213049
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
125213049
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
125213049
Membrane trafficking [BR:
shis04131
]
SNARE
SNARE associated proteins
Others
125213049
Autophagy
Aggrephagy
Other aggrephagy associated proteins
125213049
Exosome [BR:
shis04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125213049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
AAA_18
Parvo_NS1
ATPase_2
IstB_IS21
Viral_helicase1
ABC_tran
AAA_7
Vps4_C
NB-ARC
NACHT
TsaE
AAA_24
ResIII
DUF815
AAA_lid_PRS2_C
Zeta_toxin
SLFN-g3_helicase
Sigma54_activ_2
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
125213049
NCBI-ProteinID:
XP_047969359
LinkDB
All DBs
Position
3:complement(10895448..10899353)
Genome browser
AA seq
807 aa
AA seq
DB search
MSNQAESSDSKGAKKDFSTAILERKKAANRLVVDEAVNDDNSVVSLHPATMEKLQIFRGD
TVLIKGKKRKDTVCIALADDACEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGLTGDLFDAYLKPYFLEAYRPVRKGDHLLVRGGMRSVEFKVVETDPGEYCV
VAPDTEIFCEGEPIRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLERISKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGISNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSVGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPLSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKKRLDN
PDSMDEDETDEVSEITPSHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPE
ATGGGASGSDPFAAPAGGAADDDDLYS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaccaagctgagtcgtccgattcgaaaggtgcgaagaaggacttctcaaccgcg
attttggagaggaagaaggcggccaatcgccttgtcgtcgatgaggcggtcaacgacgac
aactccgtcgtctccctccaccccgccaccatggagaagctccagatttttcgtggagac
actgttttgatcaaggggaagaaaagaaaagatactgtctgcattgcccttgctgatgat
gcatgtgaagagccaaagattaggatgaacaaggttgtcaggtcaaacttgagggttcgg
cttggggatgttgtatctgttcatcaatgtccagatgttaaatatggaaagcgtgtgcac
atactacccatagatgatacgatagaaggtctcactggggatctttttgatgcatatctc
aaaccatactttcttgaagcatatcgccctgtgaggaaaggagaccatcttcttgtgaga
ggtgggatgaggagcgtggaatttaaggttgttgagacagatcctggggaatattgtgtt
gtggctcctgacaccgagatcttctgtgaaggggagcctatcaggagagaggatgaagat
agacttgatgaagttggctatgacgatgttggtggagttcggaaacaaatggctcagatc
cgtgagttagtggagttgccactgagacatcctcagctattcaaatcaattggtgtgaag
cctccaaaaggaattctactttatggacccccaggttctggaaagactttgattgctcga
gctgttgctaatgaaactggtgctttctttttcttgattaatggtccagaaattatgtct
aaattggctggagagagtgagagtaatctgagaaaggcatttgaggaggcggagaagaat
gctccatctattattttcatcgatgaaattgactcaatagctcctaagagagagaaaaca
catggagaagttgagaggaggattgtttcccaactcctgactctcatggatggtttgaaa
tctcgtgcgcatgttatcgttatgggtgcgactaaccgaccaaacagcattgaccctgct
cttaggaggtttggtaggtttgacagggagatagatattggtgttcctgatgaagttgga
cgcctcgaagttcttaggattcataccaagaacatgaagctttctgaagatgttgattta
gaaagaatctcaaaggacacccatggctatgtcggtgctgatcttgcagctctctgcaca
gaagctgcactacagtgcatcagagagaaaatggatgttatcgacttggaagatgattca
attgatgcagagatactgaactctatggccgtaacaaatgagcacttccatactgctctt
gggataagcaatccatctgctttgcgagagacagtagttgaagtacccaatgtctcttgg
gaagatattggaggacttgaaaatgttaagagggagcttcaggagactgttcaatatcct
gtggaacatccagaaaagtttgagaaatttggcatgtcgccttcaaagggtgttctattc
tatggtcctcctgggtgtggtaagacgctgcttgccaaggcaattgcaaatgaatgccag
gccaattttattagtgtgaaagggcctgaactgcttaccatgtggttcggagagagtgaa
gctaatgtccgtgaaatatttgacaaggctagacaatctgctccttgtgttctcttcttt
gatgagctcgactctattgctacccagagaggaggcagtgttggtgatgcaggcggtgct
gctgatagagttctcaaccaacttctcacggagatggatggcatgaatgccaaaaagacc
gttttcattattggggccactaacagacctgacataattgatcctgcgcttcttcgtcca
ggtcgtcttgatcaattgatatacatccctctgccagatgaggattctcgtcatcaaatc
ttcaaagcctgccttagaaaatcgcccctttccaaagatgtcgatctacgagctctggcc
aagtacactcaaggatttagtggggcagacatcacagagatttgtcagcgggcttgcaaa
tatgccataagagagaacatcgagaaagacatagaaagagagaagaagagattagataat
cccgactcaatggatgaagacgagactgatgaagtgtcggagatcacaccctcacatttt
gaggagtcgatgaaatatgctcgtagaagtgtgagtgatgctgatatacgcaagtaccag
gcctttgcgcagaccttgcagcagtctcgtggctttgggacggaattcaggtttcctgaa
gccaccgggggtggggcatctggatccgacccatttgcagcccctgccggaggagctgct
gatgacgacgacttatatagttag
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