Salvia hispanica (chia): 125213128
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Entry
125213128 CDS
T09851
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3-like
KO
K14948
polypyrimidine tract-binding protein 2
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125213128
Spliceosome [BR:
shis03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
125213128
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_ACIN1
RRM_occluded
RRM_10
RL
RRM_PARP14_3
DUF4523
RBD_AKAP-17A
TGF_beta
Motif
Other DBs
NCBI-GeneID:
125213128
NCBI-ProteinID:
XP_047969453
LinkDB
All DBs
Position
3:50420527..50426171
Genome browser
AA seq
461 aa
AA seq
DB search
MAEPSKVIHVRNVGHEIAESDLLQLFQPFGVIAKLVMLRAKNQALLQMQDVPSAVNALQF
YSNVQPSIRGRNVYIQFSSHQELTIMDQSSQAREDEVCCWGLLSILSLCWSAVRLSLDTQ
PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSHQSAISARN
SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPSEQKGKSSQPGYGDPSIY
PHAVGFAQLGNAAAIAAAFGGGLPPGISGTNDRCTVLVSNLNADRIDEDKLFNLFSIYGN
IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITTGADTHEY
SNSNLNRFNRNAAKNYRYCCSPTKMIHISTLPQDVTEEEIVNHLEEHGTIASTKLFEMNG
KKQALVLFENEEQATEALVCKHATSLGGSTIRISFSQLQTI
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcagagccctcaaaagtcattcatgttcgtaacgtgggtcatgaaattgctgagagt
gacttgttgcagctgttccagccatttggagttatcgcaaaacttgtgatgcttcgagca
aagaatcaggccctcctacaaatgcaagatgttccttctgcagtaaatgcattgcagttc
tacagtaatgtccaaccaagcataaggggcagaaatgtttatatccaattctcatcacac
caggaactaacgattatggatcaaagttcgcaagcacgtgaagacgaggtttgctgttgg
ggtcttctctctattctgtctctatgctggtctgctgttcggctctctctggatacccag
cctaaccgaatactcttagtcacgatacatcacatgctatatcctattactgtggaagtg
ctgcatcaagttttttctccccatggatttgtagagaagatcgtcacgtttcagaagtcg
gctggttttcaagctctaatacagtatcaatcgcatcaaagtgctatctcagctaggaac
tctcttcagggacgaaatatatatgacggttgctgtcagttagacatccagttctcaaac
cttgacgaattgcaagtgaattataataatgagcgatctagggatttcacaaacccttcc
ttgccttcggaacaaaaggggaaatcctctcaacctggatatggagatccaagcatatat
ccccatgcagtcggatttgcacagttgggcaatgctgcggcaattgctgctgcttttgga
gggggtctcccacccggtataagcggtaccaatgatcggtgcacagttcttgtatctaat
ctgaatgctgatagaatagatgaggataagctgtttaatttgttctcgatatatgggaac
attattagaatcaaacttctccgaaacaaaccagatcatgcattggtacagatgggtgat
ggttttcaggctgaactggctgttcattttttgaagggggctatgctgtttggaaagcgc
ttggaggttaacttttcaaagcatccaaacattacaactggagctgatacgcatgagtac
tccaactcaaatctcaatcgtttcaatcgaaatgcagccaaaaattacaggtattgttgc
tcaccaacaaaaatgatccacatctcaactctcccccaggatgtaactgaagaagaaata
gtaaatcatttggaagagcatggaacaattgctagtacgaaactgtttgagatgaatgga
aagaagcaggctcttgtcctttttgaaaatgaggagcaggctacagaagctcttgtgtgc
aagcatgccacttcccttggtggttcaaccattcgaatttccttctctcagttgcaaacc
atttga
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