Salvia hispanica (chia): 125213129
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Entry
125213129 CDS
T09851
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3-like
KO
K14948
polypyrimidine tract-binding protein 2
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125213129
Spliceosome [BR:
shis03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
125213129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RL
RRM_PARP14_3
DUF4523
RRM_10
Motif
Other DBs
NCBI-GeneID:
125213129
NCBI-ProteinID:
XP_047969454
LinkDB
All DBs
Position
3:50419540..50440397
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AA seq
437 aa
AA seq
DB search
MAEPSKVIHVRNVGHEIAENDLLQLFQPFGVIAKLVMLRAKNQALLQMQDVPSAVNALQF
YSNVQPSIRGRNVYVQFSSHQELTIMDQSSQARGDEPNRILLVTIHHMLYPITVEVLHQV
FSPHGFVEKIVTFQKSAGFQALIQYQSHQSAISARNSLQGRNIYDGCCQLDIQFSNLDEL
QVNYNNERSRDFTNPSLPSEQKGKSSQPGYGDPSIYPHAVGFAQLGNAAAIAAAFGGGLP
PGISGTNERCTVLVSNLNADRIDEDKLFNLFSIYGNIIRIKLLRNKPDHALVQLGDGFQA
ELAVHFLKGAMLFGKRLEVNFSKHPNITTGADTHEYSNSNLNRFNRNAAKNYRYCCSPTK
MIHISTLPPDVTEEEIVNHLEEHGTIASTKLFEMNGKKQALVLFENEEQATEALVCKHAT
SLGGSTIRISFSQLQTI
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggcggagccctcaaaagtcattcatgttcgtaacgtcggtcatgaaattgctgagaat
gacttgttgcagctgttccagccatttggagttattgccaaacttgtgatgcttcgagcc
aagaatcaggccctcctacaaatgcaagatgttccttctgcagtaaatgcattgcagttc
tacagtaatgtccaaccgagcataaggggcaggaatgtttatgtccaattctcatcacac
caggaactaacgattatggatcaaagttcgcaagcacgtggagacgagcctaaccgaatc
ctcttagttacgatacatcacatgctatatcctattactgtggaagtgctgcatcaagtg
ttttctccccatggatttgtagagaagatcgtcacgtttcagaagtcggctggttttcaa
gctctaatacagtatcaatcgcatcaaagtgctatctcagctaggaactctcttcaggga
cgaaatatatatgatggttgctgtcagctagacatccagttctcaaaccttgatgaattg
caagtgaattataataatgagcgttctagggatttcacaaacccttccttgccttcggaa
caaaagggcaaatcctctcaacctggatatggagatccaagcatatatccccatgcagtg
ggatttgcacagttgggcaatgctgcggcaattgctgctgcctttggagggggtctccca
cccggtataagcggtacaaatgagcggtgcacagttcttgtatctaatctgaatgctgat
agaatagatgaggataagctgtttaatttgttctcgatatatgggaacattattagaatc
aaacttctccgaaacaaaccagatcatgcattggtacagttgggtgatggttttcaggct
gaactggctgttcattttttgaagggggctatgctgtttggaaagcgcttggaggttaac
ttttcaaagcatccaaacattaccactggagctgatacgcatgagtactccaactcaaat
ctcaatcgtttcaatcgaaatgcagccaaaaattacaggtattgttgctcaccaacaaaa
atgatccacatctcaactctccccccggatgtaactgaagaagaaatagtaaatcatttg
gaagagcatggaacaattgctagtacaaaactgtttgagatgaatggaaagaagcaggct
cttgtcctttttgaaaatgaggagcaggctacagaagctcttgtgtgcaagcatgctact
tcccttggtggttcaaccattcgaatttccttctctcagttgcaaaccatttga
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