Salvia hispanica (chia): 125213302
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Entry
125213302 CDS
T09851
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
shis
Salvia hispanica (chia)
Pathway
shis03030
DNA replication
shis03420
Nucleotide excision repair
shis03430
Mismatch repair
shis03440
Homologous recombination
shis03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125213302
03420 Nucleotide excision repair
125213302
03430 Mismatch repair
125213302
03440 Homologous recombination
125213302
03460 Fanconi anemia pathway
125213302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shis03000
]
125213302
03032 DNA replication proteins [BR:
shis03032
]
125213302
03400 DNA repair and recombination proteins [BR:
shis03400
]
125213302
Transcription factors [BR:
shis03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
125213302
DNA replication proteins [BR:
shis03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
125213302
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
125213302
MMR (mismatch excision repair)
125213302
DSBR (double strand breaks repair)
HR (homologous recombination)
125213302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Rhabdo_glycop_CD
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
125213302
NCBI-ProteinID:
XP_047969725
LinkDB
All DBs
Position
1:complement(29119305..29122663)
Genome browser
AA seq
622 aa
AA seq
DB search
MAKTVTPDAISVILANPCPDSSSDLPEIIVQVVDLKPTGNKYMFMASDGKMKVRALLQST
LASEVTSGNIQNLGLIRVLDYTLNDIPTKNEKFLIVSKCDVVSSALEAEYKAEVKVEDGV
NSLKQNQEMDADVKTGSPAIVLKPKQEVVTKSAAQIVHDQHGNAAPAARMAMTRRVHPLV
SLNPYQGNWTIKVRVTSKGNMRTYRNARGEGCVFNVELTDEDGTQIQATMFNDAAKKFFD
KFQMGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEASNEATFIPETKFSFTPID
ELGPFVNGRELVDVIGVVQSVSPTMSIRRKSNNETIPKRDIVIADETKKTVVVSLWNDLA
TSVGQELLDMADKSPVVAIKSLKVGEFQGVSLSALSKSIILVDPDTPEAKKLRSWYDSEG
KDTSLAAIGNDSSPSNRNGARSMYTDRVTLSHITSNLSLGEDKPVYFSIKAYVSTIKPDQ
AMSYRACKTCSKKVTEAVGSGYWCEGCQKNEDGCSLRYIMALKVSDASGEAFVSVFNEQA
EKMIGCTADELNEIKLHDGEATYQKKLKEATWVPHLFRVSVAQNEYNNEKRQRITVRAVA
PIDYAAESKYLIEEMTKIKVSN
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaactgtaaccccagatgctatttctgttattctagcaaacccatgcccggat
tcttcttccgatttgccggaaataattgtacaagtcgtcgatctcaagcccacgggcaac
aaatacatgttcatggcgagtgatggcaaaatgaaggtgagggctctgttgcagtcgact
ctagcgtctgaagtcacatctgggaacatccagaatttggggcttattcgcgtgcttgac
tacactctcaatgatatcccaaccaagaatgaaaagttcttgattgtgtccaagtgtgat
gttgtgtcgtctgcgcttgaggccgagtataaggctgaggttaaggttgaggatggtgtg
aattctttgaaacagaaccaggaaatggatgctgatgtgaaaactgggtctcctgctata
gtgttgaagccaaaacaagaagttgtgactaaatctgctgctcaaattgttcatgaccag
catggaaatgcggcaccagctgcccgaatggcgatgacacggcgagtccatccacttgtt
tctttgaatccttatcaaggaaactggacaattaaagtccgggtcacgagcaagggaaac
atgcggacttacaggaatgctagaggagaaggctgtgtatttaatgtagagttgacggat
gaagatggtactcaaatacaagcaaccatgtttaatgatgctgcgaagaaattctttgac
aagtttcagatggggaaggtttactacatatcaaagggaaccttgaaagtagcaaacaag
caattcaaaactgtgcaaaatgattatgagatgaccttgaatgaaaattcagaagtggaa
gaagccagcaatgaggcaacctttattcctgaaacaaaattcagtttcaccccaattgat
gagttgggtccatttgtcaatggaagggaacttgttgatgttattggcgtggttcagagc
gtgtctcctacaatgagcattagaaggaagagcaacaatgaaactatcccaaagcgtgat
atagttattgcagatgagacgaagaaaactgtggtggtgtctctatggaatgatcttgcc
acgagtgttgggcaagaacttcttgatatggctgataaatctcctgtagttgctataaaa
tctctcaaagttggtgaatttcaaggtgtatcattatcagcactgagtaaaagtattata
ttagttgaccctgacacaccagaagccaaaaagctgagatcttggtatgattctgaaggc
aaagacacttctttggctgctattggtaatgactcaagcccgtccaacagaaatggagct
cgctccatgtacactgacagagttaccttatctcatatcaccagtaacctttccttggga
gaggacaagcccgtatacttctccatcaaagcatacgttagcaccatcaaacctgatcaa
gcaatgtcgtaccgtgcttgcaagacctgctccaagaaggttactgaagctgtgggatct
ggctactggtgtgaagggtgccagaaaaatgaagatggctgcagtttaagatacataatg
gcattgaaggtttctgatgcaagtggtgaagcgtttgtttcagttttcaatgagcaagcg
gagaaaatgattggatgcacagctgatgagctgaatgagataaaacttcatgatggagag
gctacttatcagaagaaactgaaggaggcaacatgggttcctcaccttttccgtgtcagc
gttgctcaaaatgagtacaacaatgagaagaggcagaggataactgtcagagctgttgcc
ccaattgattatgcagctgaatccaagtatctgattgaagaaatgacaaagatcaaagta
tctaactag
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