Salvia hispanica (chia): 125213359
Help
Entry
125213359 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125213359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125213359
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125213359
Spliceosome [BR:
shis03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125213359
Complex B
125213359
Complex C
U2 SnRNP specific factors
125213359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125213359
NCBI-ProteinID:
XP_047969816
LinkDB
All DBs
Position
3:11967727..11971668
Genome browser
AA seq
766 aa
AA seq
DB search
MSKRKFGFEGFGINRQATYNFERSQQPQRLYVPPSSRGGDEDDDIDNIEYADDREAANDV
VSDSNNGAAAEDDEVDPLDAFMEGLQEEIKAAPPPKAKDKLDKYKDDVEDDPMESFVMAK
KDLGLQLAADALHAGYNSDEEVYAAAKAVDAGMLEYDSDDNPVILDKKKIEPIPPLDHSS
VDYEAFNKDFYEEKPSISGMSEQDVAEYRKTLAIRVSGFDVPRPVKTFEDCGFSVELMKA
IAKQAYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTASFVLPMIVHTMDQPELANEEGP
IGVICAPTRELAHQIYLEAKKFSKSCGIRVAAVYGGMSKLDQFKELKAGCEIVVATPGRL
IDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK
LAREILSDPVRVTVGEVGMANEDITQIVHVMPSDAEKLPWLLEKLPVMIDEGDVLVFASK
KAAVDEVEAQLLQRGLKVAALHGDKDQSSRMEILQKFKSGIYHVLVATDVAARGLDIKSI
KSVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLIAAGQNVSP
ELMDLAMKDGRFRSKRDARKGGGKRAKGRVGGGGGGRGVRGVDFGLGIGYNTESKAELTP
APSRSATVNSLRTGAMAQFRSSFVPASSTSQDQFSTGSRPNNRPVLRGFVSGGTIGGDIP
PVKVQSVTPTTSASNNTPNSGEIGKQTHSERDNKARERRRPSGWDR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgaaaattcggattcgagggcttcggaatcaatcgccaagctacctacaac
ttcgagcgctcacagcagcctcagcgcttgtacgttcctccttcctcccgcggcggcgac
gaagacgacgacatcgacaatattgagtatgccgacgatcgtgaagctgcgaacgacgtg
gtttcggacagtaacaacggcgcagcggccgaagacgacgaagttgatcctctcgatgcg
tttatggaagggctgcaggaagagattaaggctgctccgccgcccaaggccaaggataag
ctggataagtacaaggatgacgtcgaagacgatccaatggagagttttgtgatggcgaag
aaggatttggggctacagttggccgcggatgcgctgcacgctggttacaattcagacgag
gaggtttatgcggcggctaaggcggtggatgcagggatgcttgagtatgattctgatgat
aatcctgttattctcgacaagaagaagattgagccgattcctccgcttgatcatagctca
gttgattacgaggcgtttaataaggatttctacgaggagaagccttctatatcaggtatg
agtgagcaggatgtggcggaatacaggaagaccttggctatccgtgtttctggtttcgat
gtaccacgacctgttaagacttttgaagattgtggattctctgtggaactaatgaaagcc
atagcaaaacaagcatatgaaaaacctacaccaatacagtgccaagctttgcctattgta
ctttctggaagagacataattggaatagcaaaaacgggctcaggaaagactgcttcattc
gtgcttcctatgattgtccatactatggatcaacctgagctagctaacgaagaaggcccc
attggagtgatatgcgcacctactagggaattggctcatcaaatatatttggaagctaag
aagttttccaaatcttgtggtatccgtgtggctgcagtttatggtgggatgtcgaagctt
gatcaattcaaggaactgaaggcagggtgtgagatagttgtagctactccaggtagattg
atagacatgattaaaatgaaggcgttgaccatgctgagggcaacctacttagtacttgat
gaagctgatcgaatgtttgatcttggttttgagcctcaaataaggtcaatagtcggtcaa
ataaggccagaccgtcaaacattactcttttcagcaactatgcctcgaaaagttgaaaag
cttgctagggagattctatctgatcctgtaagagtaactgtaggagaggtgggtatggcc
aatgaggatattacccaaattgtccatgtgatgccatcagatgcagaaaagttgccctgg
cttctcgagaagcttcctgtaatgatagatgaaggtgatgttctggtctttgcctcaaag
aaggcagcagttgatgaagtagaagcacaactgcttcagagaggtcttaaggtagcagca
cttcatggtgataaggatcagtcttctcgtatggagatattacaaaaattcaagtctgga
atataccatgtacttgttgcaactgatgttgctgctcgaggtcttgatatcaaatccatt
aaatctgtcgtcaactttgacatagctaaagacatggacatgcatgtacatcgcattgga
aggacaggtcgtgcaggggataaagatggaactgcatacaccctgataacgcaaaaggag
gcaagatttgctggtgaattagttaacagtttgattgctgctggtcaaaatgtatccccg
gagctcatggatcttgctatgaaggatgggcggttcagatcaaaacgcgatgcacgaaaa
ggaggtggtaaaagagctaaaggaagggtaggtggaggtggcggtggcagaggagttcgt
ggtgtggacttcggtttgggcatcgggtataataccgaatcaaaggctgaattaacccct
gcacctagtcgttctgcgacagttaactcactgaggacaggggcaatggcacaatttaga
agcagtttcgtacctgcatcatcaacttcccaggatcaattcagtacaggttcacgaccc
aataatcggcctgttttacgcggctttgtatctggtgggactattgggggtgatattcct
cccgtaaaagtacagagtgtgacacctacaacatctgcgtcaaacaataccccaaactcg
ggagaaatcggaaagcagacacattctgaaagagacaacaaagcaagagaaagacgaagg
ccctctggctgggatcgttag
DBGET
integrated database retrieval system
