Salvia hispanica (chia): 125213422
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Entry
125213422 CDS
T09851
Name
(RefSeq) uncharacterized protein LOC125213422 isoform X1
KO
K06100
symplekin
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125213422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125213422
03019 Messenger RNA biogenesis [BR:
shis03019
]
125213422
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125213422
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
125213422
U7-dependent histone pre-mRNA processing factors
125213422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
HEAT_GCN1_C
Adaptin_N
Cnd1
Motif
Other DBs
NCBI-GeneID:
125213422
NCBI-ProteinID:
XP_047969920
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All DBs
Position
3:complement(33986349..33996020)
Genome browser
AA seq
1333 aa
AA seq
DB search
MVAMAPAVSREKIAARINSIKNGASADLSPKLDHLRRLREELMSADSHLVVELISPLLDL
LSDRLSPVRKFTTRMIGEIGLKHLQLLPEIIPALVNVLKDDTPAVARQAISCGFDIFRYS
LVNVAIQGLYSSEFDDSLRSSWAWVIKFRDEICSMAFKEESEGRKLPALKFVESVVLLYT
PDPNGSLEPPSDKNFQGNFDEFNVSWLRGGHPLLNVRDLSAEASQSLGLLLDQLRSPSLK
SHSYLVIIVLIKSLSAVARKRPAFYGRILPVLLGLDPSSSVTSVSKGMHLAGVHHALKNA
FESCLNCTHPGAAPWRDRLVNALKEIKVGKPVAQAANDMSENNGRTEWTRDSDVSQILED
EKPSIKSLTEHGNTGRKRTGGLVTVDATEDDNSGKRARSTPGDLDGPGNERNQGQDRVPS
SGTTPFSDVDSGPVQQLVAMFAALVAQGEKAAASLEILISSISADLLAEVVMANVWNFPP
ERLQSEGDEEPLTSAAAHTEMVESDTHIKHLSLLLKDTLLQFTSSQETETGNGDSELEQN
LEEEPPVTLAGSNVAHDDLSNTREHTTVPVSESAFSGDISYPMETGYAVITSEVTDIEGR
ENEIPGLSSATEGDGLTENMDTIPKGSVHSDDANQEKSTNLGGISIETDRTPNELAQSLS
TDRSEELSPKAATTDVSSLNSSTATSIGLASQLVLPKIGAPVIHLADEQKDQLQQLAFVR
IVDAYKHVAVAGGSQVRFSVLAHAGLEFPSELDPWKSLQAHVLSDYVNHEGHELTLRVLY
RLFGEAEEDRDFFISATAKSVYEAFLLQVAETLRDSFPASDKSLSRLLGEAPYLPKSVFE
MLDCLCSPSAGAISDKELPGGDRVTQGLSAVWSLILLRPPIRDACLQIALKSAVHQLEEV
RMKAIRLVANKLYPLSTISGRIEDFAKDMLLSVVTDDGISTKEANELQKDENPSSENQPG
SSASKEIPPDGHHMTASESSSSFTVVEVQRCMALYFALCTKKHSLFRQIFYAYKDTSKVA
KQVVHQQIPLLVRTIGPSSDLLDILSDPPIGSEGLAIQVVNTLTDGTVPSPNLVSTIKRL
YDTKLKDIDILVPVLPFLSKDEVPVLFPHLVNVPLDKFQVVLSRLLQGFNHSTPVLTPAE
ALIAIHKIDPEKDGVPLRKITDACNACFEQRHTFSQQVLAKVLNQLVEQIPLPFLFMRTV
LQAIGAFPSLVQFIMEILSRLVSKQIWKNPRQWVGFVKCAHVTMPDSFGVLLQLPAAQLE
NSLNRIPALKAPLVEHASQPNIRSTLPRSTLTVLGLEQELPTSTTQPTQSQTQTEEADNL
EKEAATEKSKESM
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggttgctatggcgcctgcggtatcgcgggagaagattgctgctcgaataaattcgatt
aagaacggagcctccgccgatctgtccccgaaactcgaccacctccggcgactgcgggag
gaactcatgtcggcggattcccatctggttgtggaactcatttcccctcttctcgacctt
ctctcagaccgtttgagccccgtccgcaaattcaccactcggatgattggtgaaattggt
ttaaagcacttgcaattgttacctgaaattataccagcactcgtaaatgttctgaaagat
gatacacctgctgttgctcgacaggctatttcatgtggttttgatatattccgctattct
ctggtcaacgtcgccatccaggggttgtactcgagtgagtttgatgattcactgcgttca
tcatgggcatgggttatcaagtttagagatgaaatatgctcaatggcatttaaggaggaa
agtgaagggagaaagttgcctgcattgaagtttgtggaatctgtagtgttactttacacc
cctgatcctaatggctctttggagccaccttctgataaaaattttcaaggaaattttgat
gaattcaatgtctcatggctacgtggtggacatccccttctcaatgttagagatttgtca
gctgaggcaagccaaagtttaggtcttttgcttgatcagctgaggtccccatctttgaaa
tcacatagttatttggtgatcatagttctaattaagagtctttcagctgttgcaagaaag
aggcctgccttttatggccgcattcttcctgttttacttggtttggatccttcaagttct
gtaacttctgttagtaaaggcatgcatcttgctggggtgcatcatgctctgaagaatgca
tttgaatcttgtttgaattgtactcaccctggtgctgcaccgtggagggatcgtttagtt
aatgcactaaaagaaattaaagttggaaagccagttgcacaagctgccaatgatatgtca
gagaacaatggaagaactgagtggacaagggattccgatgtatctcaaattcttgaggat
gaaaaaccttctattaaatctctgacagagcatggtaatactggtcgaaagagaactgga
gggctagttacagtagatgctactgaagatgataactccggaaagcgtgcaagatcaaca
cctggcgatttagatggaccaggcaatgaaaggaatcagggacaagatagagtgccatct
agtggaacaacaccattttcagatgtagatagtgggccagtgcagcagcttgtggcaatg
tttgctgcattggttgctcagggtgagaaagcggctgcttctttggagattctcatctct
agcatttcagccgacttattagccgaagtagttatggccaacgtctggaattttcctcca
gaaagacttcaatctgaaggggatgaagagccgctcacaagtgcggctgctcatactgag
atggttgaaagtgatacccacatcaaacatttgtcgttgttgctaaaagatacactgtta
caatttacatcctctcaagagacagaaactggaaatggagatagtgagcttgagcaaaat
ctagaagaggaaccaccagtaaccttggctggcagtaatgttgcacatgatgacttgagc
aatacaagggaacatactacagtccctgtcagtgagtctgctttttctggggacatttca
tatccaatggagactggttatgcagtgatcacatctgaagtcactgatattgaaggtaga
gaaaatgaaattccaggactatcttcagctactgagggtgatggattaactgagaacatg
gatacaattccaaagggctcggttcattcagatgatgctaatcaagagaaatctactaat
ttgggtgggatatcaatagaaacagatagaacaccaaatgaattagctcaatctttatcc
acggataggtctgaagagcttagccctaaagcagcaaccacagatgtgagtagcttgaat
tcctcaaccgcaacttctattgggttagcttctcagttggttctccccaagataggagcc
cctgtcatccacctagctgacgagcaaaaggatcagctacaacaacttgctttcgtgcgc
attgttgatgcttataaacatgttgctgttgctggtggctctcaagtccgtttttctgtc
ctcgcacatgcaggattggagttcccttctgagctagacccatggaagtcactgcaggct
catgtattgtcagactacgtaaatcatgaggggcacgagttaacattgcgcgtcctctac
aggttatttggtgaggcagaagaagatcgtgacttctttatttcagccactgctaaatct
gtctatgaagcatttcttctccaagtggcagaaacacttagagattcttttccagcttct
gacaaatctctgagtagattgcttggggaagccccgtatcttccaaagtcagtttttgaa
atgttggattgcttatgctctcctagtgctggtgctatctcagacaaggagttgcctggt
ggagatagagttacccaggggctcagtgctgtctggagcttgattttgctcagacctcca
attcgcgatgcttgcctccaaattgctttgaagagtgcagtgcatcaattagaagaagtt
cgaatgaaggcaatacggctggttgcaaacaagctttatcctttgtcaacaatatctgga
agaattgaagattttgcgaaggatatgttgctgtcagttgtaacagatgatggaatctct
acgaaggaggctaatgagctgcagaaggatgaaaatccttcaagtgaaaaccagccaggt
agttcagcatctaaagagattcccccagatggtcatcatatgacagcatctgaaagcagt
tcatcttttactgtggttgaggttcagcgttgcatggctctttatttcgcactgtgtaca
aagaaacattctctctttcgacaaattttttatgcgtataaagacacatccaaagtagca
aagcaggtagttcatcaacaaattccattacttgttcgaactattggcccatctagtgat
ctccttgatatattatctgatccaccaataggaagtgaaggcctagcaattcaggtagtg
aatacactgacagatggaacagttccttctccaaacttggtatctaccattaagaggctg
tatgatacaaagctgaaggatattgatattctggttcctgtattacctttcttatcaaaa
gatgaggttccagtactttttccccatcttgtgaatgtaccgctggataagttccaagtt
gtgctttctcgtcttcttcaggggttcaatcattctactccagtcttaacccctgctgaa
gcattaattgccatccataagattgaccctgaaaaagatggagttcctttgagaaagata
acagatgcttgcaatgcttgtttcgaacagagacatacattttcgcagcaagttctggcc
aaagtgttgaatcaattggttgagcaaattcctttaccctttctattcatgcgtacagta
ttgcaagcaattggtgcttttccttctttggtccaattcataatggagattctatcccgt
cttgtaagcaagcagatttggaagaatccaaggcagtgggtgggtttcgtgaagtgtgct
catgtgaccatgccagattcatttggtgttctgcttcagctaccggcagcacagcttgaa
aattcattgaatagaataccagctctcaaggctcctttagttgaacatgcaagccaaccg
aacataagatccacgcttccgaggtctaccttaactgttcttggcttggagcaagagcta
ccaacctctaccacacaaccaactcaatctcaaactcagaccgaagaggccgataatttg
gaaaaggaagcagcgacagaaaagtccaaagaatctatgtaa
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