Salvia hispanica (chia): 125213483
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Entry
125213483 CDS
T09851
Name
(RefSeq) RNA-binding protein Y14A-like
KO
K12876
RNA-binding protein 8A
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
shis03015
mRNA surveillance pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125213483
09122 Translation
03013 Nucleocytoplasmic transport
125213483
03015 mRNA surveillance pathway
125213483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125213483
03041 Spliceosome [BR:
shis03041
]
125213483
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125213483
Spliceosome [BR:
shis03041
]
Complex C
Other components
EJC/TREX
125213483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
125213483
NCBI-ProteinID:
XP_047970013
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All DBs
Position
3:complement(5044136..5046508)
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AA seq
195 aa
AA seq
DB search
MANAEAEALDFEPEEDDLMDEDVGDGSPNRATAPRLKSAITGGGSAPKKTKGRGFRDEAA
AEADRNARMSAPFDSLDSEGGPGPERSIEGWIILVTGVHEEAQEDDLQNAFGDFGEIKNL
HLNLDRRTGFVKGYALIEFEKFEEAQRAISEMDGAELLTQIMNVDWAFSKGPFRRRNIRR
RSPRGHRSRSPRRRF
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgcggaagcggaggccctcgatttcgagccggaggaggacgatcttatggac
gaggacgtcggcgacggatcccccaaccgagccaccgctcctcgcctgaagtctgccatc
accggcggcggctccgctccgaagaagaccaagggccgtgggtttcgcgacgaggccgct
gctgaagctgaccgcaatgctcgcatgtctgcccccttcgattcgctcgattcagaaggc
ggccctggccccgaacgatctattgaaggatggattattctggttactggagttcatgaa
gaggctcaagaggatgatctacaaaatgcatttggtgattttggagagataaagaattta
cacttgaatcttgatcgtcgtacgggttttgtcaagggctatgctctaattgaatttgag
aagtttgaggaggcacagagggccattagcgagatggatggagctgaactcctaacccag
atcatgaatgttgactgggcattcagcaaaggcccattcagaagaaggaacataaggagg
agatcacctcggggccatcggtccagaagtccaaggaggagattctga
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