Salvia hispanica (chia): 125213492
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Entry
125213492 CDS
T09851
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03440
Homologous recombination
shis03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125213492
03460 Fanconi anemia pathway
125213492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shis03032
]
125213492
03400 DNA repair and recombination proteins [BR:
shis03400
]
125213492
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
125213492
DNA replication proteins [BR:
shis03032
]
Eukaryotic type
DNA Topoisomerases
125213492
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
125213492
FA (Fanconi anemia) pathway
125213492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-CCHC
Toprim_4
Motif
Other DBs
NCBI-GeneID:
125213492
NCBI-ProteinID:
XP_047970026
LinkDB
All DBs
Position
1:9018980..9036330
Genome browser
AA seq
918 aa
AA seq
DB search
MAGGGGGRSIRALNVAEKPSVAKQVAGILSKNPSSGGMRTRDGRSRYNRIFEFNCVVRSQ
LIQMSFTSVTGHLMELEFDDRYRKWHSCDPVDLYHAPVKKYVPQDKLDIQKTLEEEARKC
QWLILWLDCDREGENIAFEVVDICMRANRNINIWRARFSALTERDIYDAIARLSPPNQLQ
AEAVDLRQEIDLRIGASFTRFQTMLLRDAFIIDSTTDDTNVVLSYGPCQFPTLGFVVERF
WEIQAHQPEEFWTINCTHNSEEGTATFNWMRGHLFEYTCAAIIYEMCVQEPTATVTNVRH
QEKPKYPPYPLSTIELEKRASRYFHMSSEKTMKVAEDLYQAGFISYPRTETDSFSSTTDL
QTMVQEQQEHPVWGTYAQRLLDPEARLWRNPSIGGHDDKAHPPIHPTKYSAGESGWSQDH
HKVYELVVRHFLACVSQPAIGAETTVEIDIAGEQFAASGRVIIAKNYLDVYRFESWGGSM
IPTYQYGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAQIGTDATMHDHIKKLIDRFY
ATKDSSMRFSPTKLGEALVMGYDEMGHELWKPRLRAEMESDMTAVSEGRKRKDEVLQTCL
QRMKACFLDARLNKGKLFEAMAVFFERSNRSTGSEQHAVGDVVRKCGLCQESDMVLKKKP
DGNFMVGCLGYPQCRNVVWLPGSVSDAIVTTNICSTCSPGPVLMIQFKFRRLEIPPNYSV
DHLGCVGGCDDTLKQLVEICGTGSRNNSNAPGRAQRHTSLSSTSQQSDSRNQTSWQTRHS
SGSYPSENARGHNARPQEAVAGDGESTIPCTSCGAPCNLRTANTPANRGRKFYSCQAQGC
NFFVWEDSANDGVTAIQRSTSRSASSGGRRGGRGRGGRSRGRGNDVSFVSAIGEPISGRC
FVCGDPAHFANACPNRGR
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcggcggcggagggcggtcaataagggcgctgaatgtggcagagaagccttca
gtggctaaacaggtggctggtatactctcgaagaatccgtcgagcggcgggatgagaact
agagacggccggtccagatacaataggatattcgaattcaactgcgtggttaggagccag
ttaattcaaatgtccttcacctctgtcacaggccacctaatggagctcgaattcgacgac
aggtatcgcaagtggcattcttgtgaccccgtcgatctctaccacgccccagttaagaaa
tatgtgcctcaggataaactggacatccagaaaacactggaggaagaagctaggaagtgt
cagtggcttatcttgtggcttgattgcgacagagaaggagaaaatatagcatttgaggtg
gttgatatttgcatgagagcgaatcgaaatattaacatttggagagcacgtttttctgcc
ctgactgaaagggacatctatgatgcaatcgcgaggctttctccgcctaatcaattgcag
gcagaagctgttgatcttcgacaagaaatagatctgcgaattggagcttctttcacacgg
tttcagactatgctattgagagatgcattcataattgattccactacagatgataccaat
gttgttttaagttatggtccttgccagttccctacccttggttttgttgtggaaaggttc
tgggaaatccaagctcatcaacctgaagagttctggactattaactgtactcataattca
gaagaaggcactgctacctttaattggatgcgaggtcatttatttgaatacacttgtgca
gcaataatatatgaaatgtgtgtccaggaacccactgcaactgtaacaaatgttagacac
caggagaagcctaagtatcctccttatcctttgagtacaatagagctggaaaaacgtgct
tcacgttacttccatatgagttcagaaaagaccatgaaagtggctgaagatctgtatcaa
gctggtttcattagttatcctcgtacagagactgatagcttttcatcgacaacagatttg
caaactatggtgcaagagcagcaagaacacccagtatggggcacatatgctcagcggtta
ctggatcctgaagcacgtctttggagaaatcctagtatcggaggacatgatgacaaagct
caccctcccattcacccaacaaaatattcagccggagagtctgggtggagtcaggatcac
cataaggtttatgaattggttgtccgacatttcctggcttgtgtttctcaaccagccatt
ggtgctgaaactaccgttgaaattgatattgcgggtgaacaatttgctgcatctggaaga
gtgataattgctaaaaattatttggatgtatatcgatttgaatcatggggaggctctatg
attccgacgtaccagtacgggcaacagtttataccaactacattgactcttgattctgga
gtgaccagacctcctcctcttctaagtgaggctgatttactaagttgtatggacaaggca
cagattggaacagatgcgactatgcacgatcatataaaaaagcttatagatcgattttat
gccactaaagactctagcatgcggttctcacctacaaaacttggtgaggcgctagtcatg
ggatatgatgagatgggtcatgaattgtggaaaccacgtctccgtgctgagatggaaagt
gatatgacagcagttagtgagggtagaaagagaaaagatgaagttctgcaaacttgccta
caacggatgaaagcctgctttctggatgctagattaaacaaaggaaagctatttgaagcc
atggctgttttttttgagagatcaaatagatctactggcagtgagcagcatgcagttggg
gatgttgttcggaaatgtggcctttgtcaggaatcagatatggtcctcaagaaaaagccg
gatggaaacttcatggttgggtgtttaggttaccctcaatgtagaaacgttgtttggcta
ccaggatcagtatctgatgccattgttaccacaaatatctgcagtacttgctctccagga
ccagttcttatgattcaatttaaatttcgtcgactggagatacctcctaactacagtgtt
gatcatttgggctgcgtagggggttgtgatgatactttgaagcagctagtggaaatatgt
ggaactgggtcccgcaacaactccaatgcccctggaagagcgcaaaggcatacatcatta
tccagcacttcccaacaaagtgattctagaaatcagacatcttggcaaacaaggcattct
tctggttcatatccttctgagaatgcacgaggtcataatgcacgaccgcaggaagctgtt
gcaggagatggagaatctacaattccatgcacctcctgcggtgcaccttgcaatttgcga
acagctaatactccggctaatagagggagaaagttctattcatgccaagctcaggggtgt
aacttctttgtatgggaagatagtgcaaatgatggagtaacagcaatacaacgaagtact
agcagatcagcatccagtggtggcagaagaggtggtcgtggtaggggtggccggagtaga
ggaaggggaaatgatgtgtctttcgtatctgctattggtgagccgatatctggtaggtgt
ttcgtttgtggagatccagcacactttgcaaatgcttgccccaatcgcggcaggtag
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