Salvia hispanica (chia): 125213615
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Entry
125213615 CDS
T09851
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125213615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125213615
03012 Translation factors [BR:
shis03012
]
125213615
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125213615
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125213615
Translation factors [BR:
shis03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125213615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
NPHP3_N
T2SSE
AAA_19
Motif
Other DBs
NCBI-GeneID:
125213615
NCBI-ProteinID:
XP_047970216
LinkDB
All DBs
Position
3:27342525..27351124
Genome browser
AA seq
989 aa
AA seq
DB search
MYHPNAQGGRRGGRGRGGGGAGRGGGRGGRGEQRWWDPVWRAERLRQMSAEKVTMDPNEW
CKKIEQMKTGNEQEMVIRQKFGKDDQQILADMAQQLGLYFHAYNKGKVLVVSKVPLPNYR
ADLDEKHGSTKNEISMSTETQARVGFLLRSSYVAKVVQNMSSSSSGPATYQSKPAEMERE
APVQYNDTDFERLSIELKQKQEKMREGNSVKAMLAFREKLPAFKVKSEFLKAVTNNQVLV
VSGETGCGKTTQLPQFILEEEISSLRGGSCNIICTQPRRISAISVAARISAERGEKLGET
VGYQIRLESKRSAQTKLLFCTTGVLLRQLIQDPDLTGITHLLVDEIHERGMNEDFLLIIL
RDILPRRPNLRVILMSATINAELFSKYFGNAPTIHIPGLTFPVEEFYLEDVLEKTRYTVQ
PESGNLPRNSRRGRQQQESKNDPLTELFEDADIDVLYKSYSASTRQSLDSWSGSQLDLGL
VEATIEHICRHEGAGAILVFLTGWDDISKLLDKLRANIFVGDPNKFLVIPLHGSMPTVNQ
REIFDRPPPNVRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISK
ASAHQRRGRAGRVQPGVCYRLYPKLIHDAMLQYQLPEMLRTPLQELCLHIKSLQLGVVST
FLSKAIQPPDPLSVENAIELLKTIGALDDREELTPLGHHLSTLPLDPNIGKMLLMGSIFQ
CLDPALTIAAALAYRSPFVLPLSRKDEAEAAKRSFAGDSRSDHIALLKAYHGWKDAKRYR
NEKSFCWDNFLSPVTMQMIEDMRFQFLDLLAGIGFVNKSQVNAYNQYSYDLEMICAILCA
GLYPNIVQCKRRGKRTAFYTKEVGKVDIHPGSVNAGIFMFPLPYLVYSEKVKTSSIYIRD
STNISDYALLMFGGNLLPSQSGDGIEMLGGYLHFSASKTVLDLIRRLRGELDGLLTRKIK
EPTLDISVEGRGVVTALMELLHSQNVRIR
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgtaccaccctaacgcacaaggcggtcgtcgcggcggtcgcggccgtggaggcggcgga
gctggcagaggtggaggccgtggaggccgaggcgagcagcgatggtgggatcctgtctgg
agagctgagcgtctgcgccagatgtccgctgagaaagtgacaatggatccgaatgaatgg
tgtaaaaaaatagaacagatgaagactggaaatgagcaggagatggtaataaggcaaaag
tttggtaaagatgatcagcaaatcctggctgatatggctcaacaattgggtctatacttt
catgcttataataaaggaaaggtccttgttgtgagcaaagtcccgttgcctaattatcgt
gcagatcttgatgaaaagcacggttccactaagaatgagatatcaatgtccaccgagacc
caagcaagagttggatttctgctaagaagctcctatgtggcaaaagtagtacaaaacatg
tcttcatcatcttctgggcctgcgacatatcaatccaaacctgctgaaatggagagagag
gcaccagtacaatacaatgatactgacttcgagagacttagtattgaattaaaacaaaag
caggaaaaaatgagggaaggtaatagtgtaaaggcaatgctagcatttagagaaaagctt
ccagcattcaaagttaaatcagaattcttgaaagctgttacaaataatcaggtactggtt
gtctcaggagagactggttgtggtaaaacaacccagcttcctcaatttattctcgaagag
gagatatcatctctacgaggtggtagctgtaatataatatgcactcaacctcgtagaatc
tcagcgatatcagtcgcagctcgaatatccgctgaaagaggtgagaagcttggtgaaact
gtaggctatcagattcgccttgaatcaaaacgctcagctcaaacaaaattgcttttttgc
acgactggggtgttacttcgacagctgattcaggacccagatttaacgggaattacccat
ttgctggttgatgaaattcatgaaagaggaatgaatgaggacttccttttaataatattg
cgagatatccttcctcgccgtcccaaccttcgtgttatccttatgagtgccactattaat
gcagagctattctccaaatactttggaaatgctcccactattcatattccaggattaacg
tttcctgttgaggaattttatttagaagatgtgttggagaagactcgttatactgtccag
ccagagtctggcaacttaccaagaaattcaagaagaggccgtcagcaacaggagtctaaa
aacgatcctttgacagaattatttgaggatgcagatattgatgtgctctacaaatcatac
agtgcaagcaccaggcaatctctcgattcttggtctggttctcagctggatttgggcctt
gtggaagcaactattgagcatatctgtcgccatgaaggtgctggagcaattctggtcttc
cttactggttgggatgatatttccaagctccttgataaactcagagctaacatttttgtt
ggagacccaaacaagttcttagttattcctcttcatggttcaatgcctacagtcaatcag
cgtgaaatttttgatcgcccaccccctaatgttagaaagattgtgctggcaaccaatatt
gctgagagtagtattaccatagatgatgttgtgtatgttatagactgcgggaaggcaaag
gagactagttatgatgctcttaataagctggcttgtcttttaccttcatggatttccaag
gcttcagcacaccagagacgtggtcgagctggtcgtgtgcagccaggagtttgctacagg
ttatatcctaaacttattcatgatgctatgctccagtatcaactgccagaaatgcttcga
acacctttgcaagagctttgtctgcatatcaagagtttgcagctcggagtagttagtaca
tttttgtccaaagcaattcagccacctgatcctctatcagttgaaaatgcaatcgagctt
cttaaaacaattggtgctctagatgatagggaagagctcactccccttggacatcatctt
agcacattgcctttggacccaaatattggaaagatgcttctgatgggttccattttccag
tgtcttgaccccgcactaacaatagccgctgctcttgcttaccgtagcccatttgtcctt
ccattaagtaggaaagatgaggcagaagctgcaaaaagatcatttgctggtgattctcgc
agtgaccacattgcacttctcaaagcatatcatgggtggaaagatgcgaaacgatataga
aatgaaaaatctttttgttgggacaattttctctcaccagtaactatgcaaatgattgaa
gatatgagatttcagtttctggacttactggccgggattggttttgtgaacaaatcacaa
gtcaatgcatacaatcagtacagttatgatttagagatgatatgtgcaatactctgtgct
ggactctacccaaatattgtgcagtgcaaacggagaggaaagcgaacagctttctacact
aaagaagttgggaaagttgacattcatccgggatctgtcaatgctggcattttcatgttc
cctcttccttatttggtttacagtgaaaaagtaaaaaccagtagcatatacataagagat
tccaccaacatttcggattatgctctgctgatgtttggtggcaatcttctgcctagccag
agtggagatggcattgaaatgcttggtggataccttcacttttcagcctcgaagacagta
ttggacttgatacggaggttgcgtggggagcttgacgggctattaacaagaaagatcaag
gagccgacactagatatctcggtggagggaagaggtgtagtcacagcacttatggaattg
ttgcacagccaaaatgtgcggattaggtga
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