Salvia hispanica (chia): 125213634
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Entry
125213634 CDS
T09851
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
shis
Salvia hispanica (chia)
Pathway
shis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125213634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125213634
04121 Ubiquitin system [BR:
shis04121
]
125213634
03036 Chromosome and associated proteins [BR:
shis03036
]
125213634
03400 DNA repair and recombination proteins [BR:
shis03400
]
125213634
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
125213634
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
125213634
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
125213634
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
125213634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_2
Prok-RING_4
zf-RING_6
zf-C3HC4
zf-C3HC4_4
zf-RING_5
zf-RING_2
RTT107_BRCT_5
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
125213634
NCBI-ProteinID:
XP_047970240
LinkDB
All DBs
Position
1:complement(42572388..42576902)
Genome browser
AA seq
660 aa
AA seq
DB search
MSEIQNVARSLNPCIFHLHKLRFELNCALCLNMLNKPILLPCNHVFCNSCVEFSSHCPAC
QQRFTNQEIRPAFHMESIVAIYKNLDATFNSSILPLISTDSNIPVSRSIVTDQVTNNLGV
MASKTNDNCPDPAPSSIKSAKCSVSEELDVNHALEVWPGSSPSSVDTKHVDQHSSPGCRN
EDVCKIRVKSSAGDQLGIVSGQVDTQGTYHAREPKRQKKLNYGPSGAALQSHTFSQKIVS
HSDAAAASKLEDCKSTDDASIISSTAPRDASNVDGYICALCHSSKITEGTGHMLHYAGGK
EVAREEAAYSKTIPVHIKCIEWAPQVYFVNDTIVNLESELARASKLKCSGCGLKGAALGC
FAKSCRRSYHVPCALEVLGCRWDCGEFLMLCPAHKSIKFPSEKSNSRKRPIEEKCSVPIE
ITPEQLNMFSTSLSKPEQLVLCGSALSSEDKCLVANLAKTTGATMYKFWNPNVTHVIAAT
DSNGACSRTLKVLMAILNGKWVLSMDWVKACAEANHPVDEEPYEVNLDNHGFRDGPRTGR
LRASENGPKLFHGLSFYFNGEFVPSYKNDLLGLIRAGGGNTIESMEDAVAERQSLEDFST
TLVVYNHDNPQGCSATEASFVLSKRAAEAGDVAKNIDARLIPHTWILESIAACQILPFSS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagattcagaacgtcgccaggtcgcttaatccctgcatctttcatctccacaag
cttcgattcgagctcaattgcgctttatgtttgaacatgcttaacaagccgatcttgctt
ccatgcaatcacgttttctgcaattcatgtgttgaatttagcagccattgccccgcatgt
cagcagcgttttaccaatcaagaaatcagaccagcctttcacatggagagcattgtggct
atttacaaaaatctggatgctactttcaactcttcgatcttgccgcttatatctactgat
tctaatatcccagtttcgagatctattgtaactgaccaagtgacaaataaccttggcgtg
atggcgtctaaaacgaatgataactgccctgaccccgctccaagtagtattaagtcagct
aagtgttctgtatcagaagaattagatgtgaatcatgctctagaagtttggcctggcagc
tccccttcctctgttgataccaaacatgtagatcaacatagcagtccaggttgtagaaat
gaggatgtatgtaaaattagagttaagagctctgctggagatcaattaggcatagtttct
ggtcaggtggatacacaaggcacttatcatgcaagggaacctaagagacaaaagaagcta
aattatggaccgtctggtgcagctttgcaaagccacacgttcagccagaaaatagtttct
cattctgatgctgctgctgcttctaagcttgaggactgcaaatctacagatgatgcttcc
atcatttcttcaactgcaccacgggatgcatcaaatgtggatggatatatttgtgcactt
tgccattcttctaagataacagaaggaactggccatatgctgcactatgctggtggaaag
gaggtagcgagagaagaagcagcttactccaagacaattcctgtccatattaaatgcata
gaatgggcccctcaggtctattttgtgaatgacactattgtgaatttggagtctgaatta
gcgcgagcttctaagctcaagtgcagtggttgtggactgaagggtgcagctttgggctgc
tttgcaaagtcctgccgcagaagctatcatgttccttgtgctctggaggtgctaggctgc
agatgggactgtggtgaatttttaatgctttgtccagctcataaatcaattaaatttcca
agtgaaaagtccaactccagaaagcgtcccattgaagaaaagtgttctgtgcccattgaa
attacacctgaacagttgaatatgttctcaacctccctaagtaagcctgaacagttggtt
ctgtgtggatctgctctatcttcggaggataagtgtttggtggctaacttagctaaaact
actggtgctactatgtacaagttctggaacccaaatgtcacccatgtgattgcagctaca
gattcaaacggtgcatgtagcagaactctgaaagttctcatggctatcttaaatggaaaa
tgggtcctctccatggattgggttaaagcttgtgctgaagcaaatcatcctgttgatgaa
gaaccttatgaagttaacctggacaatcacgggtttcgtgatggcccaagaactggcagg
ttgagagcatcagagaatggtccaaagcttttccatggattgagcttttacttcaatggc
gagtttgttccgtcttacaagaacgatctcttaggtttaatcagagctggtggaggcaac
actattgagagcatggaggatgcagttgcagaaaggcaaagtcttgaagatttttcgaca
acgttagtagtttacaatcacgataaccctcaagggtgttcagcaacggaagcaagtttt
gttttgtcgaagagagctgcagaagcaggggatgtggcgaaaaacatagatgctcggctc
attccacatacatggattttggaatccattgctgcatgccaaatcttgccattttcatcc
tga
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