Salvia hispanica (chia): 125213652
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Entry
125213652 CDS
T09851
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125213652
09123 Folding, sorting and degradation
03018 RNA degradation
125213652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125213652
03041 Spliceosome [BR:
shis03041
]
125213652
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125213652
mRNA cycle factors
Stress granule specific factors
125213652
Spliceosome [BR:
shis03041
]
Complex C
Other components
Complex C specific factors
125213652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RRM_3
RRM_Nup35
RRM_7
RBD_DEAH11
RRM_RdRP1_2
RRM_MARF1
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
125213652
NCBI-ProteinID:
XP_047970263
LinkDB
All DBs
Position
3:9737540..9742328
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AA seq
647 aa
AA seq
DB search
MAAQVQMQSQVPVVNAAAASGGAPFVTSLYVGDLEVNVTDSQLYDLFSNMGDVVSVRVCR
DLTSRRSLGYGYVNFGNSQDAERALMELNFTPLNGKPIRVMYSHRDPSVRRSGNGNIFIK
NLDKDIDHKALHETFSSFGTILSCKVATNSSGQSLGYGFVQYATEESAQKAIEKLNGMLL
NGKQVYVGPFVRKQEREMAVDKTKFTNVFVKNISETTTEEDLQKMFGEFGQITSVVVMRN
EDGTSKCFGFVNFEDADDAARAVDSLNGKKIDNKELYVGRAQKKSEREVQLKNQFEQSLK
EAVDKSQGSNLYVKNLDDSINDDQLKELFASYGSITSCKVMRDPKGISRGSGFVAFSSPE
EAARALSEMNGKMIASKPLYVALAQRKEDRRARLQAQFSQMRPITMAPTVAPRMPMYTPG
GPGPGLGQQIFYGQAPPAMIPPQPGFGYQQQLVPGMRPGGPLMPNMFVPMVQPGQQGPRP
GGRRGNAGPMQQGPQPVPVMQQQMVPRGRGSRFPPGRGMPDPMQGMAGGMLPVPYEMGGL
PLRDAGISRPVPIGALASALANASPSEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQ
TEVLHLLESPEALKAKVAEAMDVLRSVSQQQSGGSPAEQLASLSLNE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggctgcccaggttcagatgcagtctcaggttccggtggtgaatgcggcggcggcttct
ggtggcgcgccgttcgtgacctcgctgtacgttggcgatctcgaagtcaacgtgactgat
tctcagctctacgatctgttcagcaatatgggagatgtggtatcggttagggtctgtagg
gatttaaccagccggcgctcgctcggatacggatacgtcaactttggcaactctcaagat
gccgaaagggcactgatggagctgaacttcactccactcaatggcaaacccattagggtt
atgtattctcatcgagaccctagtgtgcgccgtagtggcaatggaaatatatttatcaag
aatttggacaaggatattgaccacaaagctctgcacgagacattttcttcttttggaacc
atcctctcatgcaaagtagcaactaattcttctggccagtcattaggttatggctttgtg
caatatgccactgaagaatctgctcagaaagctattgagaagcttaatggaatgttattg
aatgggaaacaagtttatgtcggaccttttgtccgcaagcaagaaagagagatggcagta
gacaagacgaaattcactaatgtgtttgtcaaaaatatatctgaaacaacaactgaagaa
gatcttcagaagatgtttggtgaatttgggcaaattaccagtgtagttgtgatgagaaat
gaagatggaacttccaaatgttttggatttgtcaactttgaagatgcagatgatgctgcc
agagctgttgactctttaaatggtaaaaaaattgataacaaggaactgtatgttggtaga
gcccagaaaaaatctgagagggaggtacaacttaagaaccaatttgagcagagtttgaag
gaagctgttgacaaatcacagggttccaacctgtatgttaagaatctggatgatagcatt
aatgatgatcagcttaaggagttattcgcttcatatggttcaataacatcttgcaaggtt
atgcgggacccaaagggaattagcagaggttctggttttgttgcattttcctcacctgaa
gaggctgccagagctctctctgaaatgaatggcaagatgattgctagcaaacctctttac
gttgcacttgctcagaggaaagaagatagaagagcacggctacaggctcaattttctcaa
atgaggccaattacaatggcacctactgtggctcctcgtatgccaatgtatactcctggt
ggtcctggtcctggtctagggcaacagatattctatggtcaagctccacctgcaatgatt
cctcctcagcctggatttggatatcaacagcagcttgtacccggtatgaggcctggtggg
cccctcatgccaaatatgtttgtccctatggttcaaccgggtcagcaaggtccacgtcct
ggtggaaggagaggtaatgctgggccaatgcaacagggcccgcagcctgttcctgtaatg
caacagcagatggttcctagaggacgcggttcccgcttccctcctggacgcggcatgcct
gatcctatgcaaggtatggcaggaggcatgctgcctgtcccatatgaaatgggtggctta
ccattgcgtgatgcaggaatctctcggccagttcctattggggctctggcatctgcactt
gcaaatgcttctcccagtgaacaaaggacgatgttgggagagaatctgtacccacttgtt
gaacaattggagccggagacggcagccaaggttactggaatgctcctggaaatggaccag
acagaggttctgcacttgttggagtcaccagaagctcttaaagcgaaggttgcagaggca
atggacgtgcttaggagtgtgtcccagcagcagagcggcggctctccagctgagcagctg
gcttcgttgtcattgaatgagtga
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