Salvia hispanica (chia): 125213727
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Entry
125213727 CDS
T09851
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125213727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125213727
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125213727
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125213727
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
125213727
NCBI-ProteinID:
XP_047970382
LinkDB
All DBs
Position
3:22633471..22644060
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AA seq
870 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELENQIDNFEAEIEGLTVKKGKTRPARLTHLEESITRHKA
HIMKLELILRLLDNDELSPEEVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVES
LEDLVTGPPSLVKGVTASSAVITMKTSLAATPVQTSATTPATIQQVTSTLDQLDDTVFQD
DAVARTSPSKGSDLSSPAPQTPPAGLATPGITSVVSVSSPVAVPSATKEEDITNFPGRRS
SPALAETGLRALGRGGLPGQPASNILPSSGNTISSNGALGAVPLLSEMGKRNILGSDDRP
GSSDMVQALASPLSNRAVMPQTAKSSDGLGSSDPGSVNDSAVGGSRVFSSPVVPGMQWRP
GNSFQNQNEPGQFRGRTEIAPDQREKYIQRFQQVQLHGQNNLLGMPSISGGKQYSAQQQN
ILLQQFNAQSSSITPQLGLGAGVQASGINSVTTSASLQPQPSAIHQPANQQTIISSTPKD
AENVLNKAEEMQQQQSLAEDSSADSAVNSGLGKTLVAEDELKSYALDASQAAVASGSIAE
PSQVIREIDLSPGQPLQSASSSGSLGVIGRRSVSDLGIIGDNISASTPNSGGMHDQSYNL
QMLEAAYYRLPQPKDSERAKTYTPRHPAATPPSYPQVQAPIVNNPAFWERLGADTYGTDT
LFFSFYYQQNTYQQYLAARELKKQSWRYHRKYNTWFQRHEEPKVATDDFEQGTYVYFDFH
IASDEQHGWCQRIKTEFTFEYSYLEDDLII
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggagctagcaggaagttacagggcgagatcgatcgggttctgaagaaggttcaagaa
ggtgtcgacgtgttcgacagcatttggaacaaggtttatgatacagacaatgcgaatcag
aaggaaaaattcgaggccgacttgaaaaaggagattaaaaagttgcagaggtatagagac
cagatcaagacatggatacagtccagcgagatcaaggataagaaggttagtgcctcttat
gagcaggctctgatggatgctcgaaagcaaattgagcgtgaaatggaacgatttaagata
tgtgaaaaagaaacaaaaacaaaagcattctcaaaagaaggtcttggccaacaacctaag
acggatccaaaggaaaaagctaaatcagagacgagagattggttgaataacgtggtcagt
gagctggaaaatcaaattgataattttgaagctgaaatagaaggacttacggttaagaaa
gggaagacaaggccagcgagactgacgcatctggaggaatccatcactcggcataaggct
catattatgaagctggaattaattctaaggctcttggataatgatgaattgagtccagag
gaagtcaatgacgtgaaggatttcttggatgactatgttgaaagaaatcaggaagacttt
gacgagtttagtgatgttgatgagctttacagttccttacctctagacaaggtggagtct
cttgaagatctagttacaggtcctcctagtcttgttaagggagttactgcttccagtgca
gtcataactatgaaaacttctctggctgcaacacctgttcaaacttcagcaacaacccca
gctaccatccaacaggttacttccaccctcgaccagcttgatgatacagtttttcaggat
gatgcagttgctagaacctcaccttctaaaggtagtgacctcagctctcctgcaccacaa
acaccaccggcaggtcttgcaactcctggcatcacaagtgttgtcagtgtgtcatctcct
gtggctgtgccaagtgctacaaaagaagaggatattacgaatttccctggtcgtagatca
tctccagcacttgctgaaactggattaagggctcttggcagaggtgggttgcctggtcaa
ccagcttctaacatccttcctagttctggcaacacaatttccagcaatggagcccttggt
gccgttcccttgttatctgaaatggggaaaagaaatatcttggggtctgatgatcgacct
gggagtagtgacatggtgcaggctcttgcatctcctttaagtaatcgcgcagttatgccc
caaactgcaaaatcaagtgatgggcttggatcatctgatcccggaagtgttaatgattct
gcagttgggggcagcagagttttcagttctcctgttgttcctggtatgcaatggcgaccc
ggaaattccttccaaaaccagaacgaaccaggccagtttcgtggaagaactgagattgca
cctgatcaaagggagaagtatatacaacgatttcagcaggtgcagctgcatggccagaat
aatcttctgggcatgccttctatttctggaggaaagcagtactctgcacaacagcaaaac
attctcttacaacagttcaatgctcaaagctcatccatcacacctcaactagggttgggg
gctggggtccaggcttcaggtattaacagtgtaacaacatctgcttcactgcagccacag
ccaagtgcaatccaccaacctgctaatcagcagacaatcatatcttcaacacctaaggat
gcagaaaatgtccttaacaaagctgaggaaatgcagcagcaacagtccctcgcggaagat
tcttctgcagattctgctgtcaactctgggctaggaaaaactcttgttgcagaggatgaa
ctgaaatcttacgctttagatgcttcacaggctgcagttgcctctggttctattgctgag
ccttctcaagtaatacgggagatagatctatctccaggacagcctttacaatcagcttca
tcttctggaagtctcggtgttattggtcgaagaagtgtgtctgaccttggtattattggg
gataatattagcgcatcaactccaaattctgggggaatgcatgatcagtcgtataatttg
cagatgcttgaggctgcttattatagacttcctcagcccaaggattcagaacgtgctaag
acctatactccaagacatcctgccgcaactcccccgagctatcctcaagtacaagcccct
attgttaataatcctgccttttgggaacgtcttggtgcagatacttatggcactgatacc
ctgttcttttcattttactaccagcagaatacctatcagcaatacttggctgctagggaa
ctaaaaaaacaatcttggagataccacagaaaatacaacacatggttccaacggcatgag
gagccaaaagttgctacagatgattttgaacaggggacatatgtgtattttgacttccat
attgccagtgatgaacaacatggatggtgtcaaagaattaagacggagttcactttcgag
tacagttatctagaggatgatttaataatatag
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