Salvia hispanica (chia): 125213870
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Entry
125213870 CDS
T09851
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shis03000
]
125213870
03036 Chromosome and associated proteins [BR:
shis03036
]
125213870
Transcription factors [BR:
shis03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
125213870
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
125213870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_34
YlbD_coat
Motif
Other DBs
NCBI-GeneID:
125213870
NCBI-ProteinID:
XP_047970593
LinkDB
All DBs
Position
3:complement(43724693..43737749)
Genome browser
AA seq
1363 aa
AA seq
DB search
MVDGGEIEKKDEETIDAEEEFSDNSAEYDNDEGEEELEGESHSEEPLTEEDVEELIAELI
EVESKAAEAQEALEEESLINVEADVRKELAQSLFGDELDKAVSGEMAAFREQWEVELDEL
ETESAHLLEQLDGAGIDLSSLYKWIERQAPNGCCTIAWKNRTHWAGTNLSSDALESVTKA
EEFLQVHRPVRRRHGKVLEEGASGFLGKKVEKSESSETANDTTTVDWDSFSRMCSDKSSF
ENVSFGSEHWASVYLASTPQQAAELGLKFPGVDEVEEIDDVDGTLSDPFIADALANEGDL
NLTEEQKKNFRKVKEEDDANADRKLHVHLKRRRRRKQSKEDFAQGELSPSDGMREHQLDG
SMGKEDVTAEKDVGDQEINDSVNRLFGIVHGERAKNNLDASSSVDVVELKGIKRSRECDE
QPDSKKFCTITLDSDGEGPDAECKPLNMEEATKLDSQVISSSESDSDSDDSDAGRSINTS
TKRRRKKIIRRIIDDAELGEETKKKIAIEKERQERLKSLEARFSTKSPVSSVNNRSSFDG
TGLEILGDISSGYVVNVVREEGEEAVRIPPSISTKLKIHQVAGIRFMWENIVQSVTKVRS
GDKGLGCILAHTMGLGKTIQVIAFLYTAMRSVDLGLRTALIVTPVSVLHNWRHEFMKWRP
SELKPLRIFMVEDVPRERRVELFAKWRIKGGVFLIGYTAFRNMSLGKYAKDRDMAREITN
ALQEGPDILVCDEAHIIKNTRADTTQALKQVRCQRRIALTGSPLQNNLMEYYCMVDFVRE
GFLGSSHEFRNRFQNPIENGQHTNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL
PPKTVFVISVKLSPLQRKMYKRFLDVHGFTKDKISGEKIIKRSFFAGYQALAQIWNHPGI
LQLRKENKDSAKCEDVENLADDCSSDENIDYNILPGVCLAEKLGNPQKKNYNGFLREDWW
RDLLKENSYKEPDQGGKMVLLLDILTMCSSIGDKALVFSQSILTLDLIEFYLSKMPRPRK
NGKCWKKGKDWYRLDGRTESSERQKLVERFNDPSNRRVKCTLISTRAGSLGINLHSANRV
IIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHATMEEKIYKRQVTKEGLAARVVDR
QQVHRTMSKEEILHLFDFGDDDITPELGQDIGVTTEPNTTIRVGNLPKQKLPLPHGGSSS
DKIIESLISDHHPSWITNYHEHETLLQENEDEKLSKEEQDLAWEVYQKTLEWEEIRRVSP
EENIPTEQQRNSVQEPAQHQQQQQQPVAEPAVDPPPAPAPKCDYALERARRRHQYKYGHR
QCTNLAHLLTLRSQQIKAGGHAICGECARVLRWEDVQPDPRCW
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggttgatggaggagagattgagaagaaggatgaagaaacaattgacgctgaggaagaa
ttctccgacaattcagctgaatatgataacgatgaaggtgaagaagagctggaaggagaa
tctcattctgaggaacccttgaccgaggaggatgtagaggagctaattgctgagcttata
gaagttgagagtaaggctgcggaagcccaggaggcactggaagaggaatccttaatcaat
gtcgaggctgatgttaggaaagaattggctcaatctctctttggtgatgagttggacaag
gctgtttccggagaaatggcagccttcagggaacaatgggaagtggagcttgacgagctt
gagacggaaagtgctcatttattggagcaacttgatggtgctggtattgatctctccagt
ctctataagtggatcgaaagacaagctccgaatggttgctgcaccatagcatggaaaaat
aggactcactgggctggaactaatttgtccagtgatgctcttgaatcagttacaaaggct
gaagagtttctccaggtccacaggcctgttagaagacggcatggcaaagtcttggaggag
ggtgccagtggtttccttggaaagaaagttgagaaaagtgaaagcagtgaaactgcaaat
gatactacaactgtagattgggattctttcagtagaatgtgctctgacaagtcatctttc
gaaaatgtaagttttggtagcgagcactgggcttcggtttatctggcaagcaccccacaa
caggctgcagaactgggtctgaaatttccaggtgttgatgaggtggaagagattgatgat
gttgatggtacattgtctgatccatttattgctgatgctttagcaaatgaaggagatttg
aatcttactgaagaacaaaagaaaaactttagaaaggttaaagaggaagacgatgcaaat
gccgatcgcaagcttcatgttcatttgaaacgaaggaggcgtaggaagcaaagcaaagag
gattttgctcaaggagaactttctccatctgatggaatgagggagcatcaattagatggt
tcgatgggtaaggaggatgtaactgctgaaaaagatgttggagatcaagaaataaatgat
agtgtgaacaggttgtttggcattgttcatggagagagggcaaagaataatcttgatgcc
tcttcttctgtggatgtggttgagttgaagggcatcaaacgttcaagagaatgtgatgaa
caaccagatagtaagaaattctgtacaattactttggatagtgatggtgagggtccagat
gctgaatgtaaaccattgaatatggaggaagccaccaaattagatagccaagttatttct
agttcagaatctgattcagattcagacgattcagatgctggcagaagcataaatactagc
actaaaagaagacgtaagaagataattaggaggatcattgatgatgctgaattgggcgaa
gaaactaagaagaaaattgcaattgagaaggagcgtcaagagcggcttaaatcattggag
gcgcggttttctaccaaatctccagtctcttcagtcaataacaggagctcatttgatggc
actggtttagaaatactgggcgacatatcttctggctacgtagtaaatgtggtcagagag
gaaggcgaagaggcagttagaattcctcctagcatctcaacgaaattaaagatccaccag
gttgcaggaatccggtttatgtgggaaaatattgttcagtctgtgacaaaagtgaggtct
ggtgataaaggccttggctgcattctggcgcataccatggggttaggtaaaacaattcag
gtcatagcatttctgtatactgctatgagaagtgtagacctaggcctgagaactgcactc
atagttacaccagtgagtgttttacacaattggcggcatgagtttatgaaatggagacca
tctgagctaaaacctctacggatcttcatggttgaagatgttccaagggaaagaagggtc
gagttgtttgctaaatggagaattaaaggcggtgtcttcttgattggttatactgctttc
cggaatatgtctcttggaaagtatgctaaggacagagatatggctagagagattactaat
gcacttcaggagggacctgacattcttgtctgcgacgaggcacacattatcaagaacact
agggctgatacaacccaggcattgaaacaagtgaggtgccagaggaggatagcgttaact
ggatcgcctcttcagaataatctcatggagtactattgtatggttgattttgttagagaa
ggatttcttggcagcagccatgagttcaggaatagattccagaacccaattgaaaatggt
caacacaccaattctactgcagaagatgtaaagataatgaatcaaaggtctcatatttta
tatgaacagttaaaaggatttgttcagagaatggacatgaatgtggttaaaaaagatttg
cctcctaaaactgtgttcgtcatctctgtgaaattatctccactccagagaaaaatgtat
aagaggtttcttgatgttcatggtttcacaaaggacaagatctcgggtgaaaagataatt
aagagatccttttttgcagggtaccaggccttagctcagatatggaaccatcctggaata
ttgcaactgaggaaagaaaacaaagattctgctaaatgtgaagatgtggagaatcttgca
gatgactgctctagtgatgagaacatcgactacaatatactccctggagtgtgtcttgca
gagaagctggggaatcctcagaaaaagaattataatggattccttcgtgaggactggtgg
agggatcttttgaaggaaaatagctataaggagcccgatcaaggcggcaaaatggtcttg
ctacttgatatcctcacaatgtgttcaagtatcggtgataaggcactggtgtttagccag
agtatattaactttggacctaatcgagttttatctttcgaaaatgcctcgtccaaggaag
aacggaaaatgttggaaaaaggggaaggactggtacagattggatggaagaacagaaagc
tcggagaggcagaaattggttgagaggttcaacgacccgtcaaacagaagagtgaaatgc
actttgatatcgactagagctgggtcactggggattaatcttcattcggccaaccgagta
attatagttgatggatcttggaacccgacatatgatcttcaagctatatatagggcttgg
aggtatgggcagaaaaagcctgttttcgcataccggttgcttgcacacgcaacaatggaa
gagaagatttataagcgccaggtgactaaggaaggacttgcagcaagggtcgttgaccga
cagcaggtgcacagaacaatgtccaaagaagagatattacatttgttcgactttggtgat
gatgacataacacctgagctgggacaagatattggagttactactgagccaaatacaact
attcgtgtaggaaacttaccaaagcagaagctgccacttccccacggaggttcatcttcg
gacaaaataattgagagcttgataagcgatcatcatcccagctggatcactaattaccat
gagcacgagaccctgctgcaagaaaacgaagacgagaagctttcgaaagaagagcaggat
ttggcttgggaggtgtatcagaagacgctcgagtgggaggaaattcgaagagtctctcca
gaagagaacatacccactgagcagcagagaaattctgtccaagaacccgcacagcatcag
cagcagcagcagcagcctgttgcagaacctgcagttgatcctcccccagcaccggctcct
aaatgtgactatgcactagaacgagccagacgacgccaccaatacaaatacggacaccga
caatgcacaaacctcgcgcacctgctgaccttgaggagtcaacagattaaggcaggtggc
catgccatatgcggcgaatgcgcccgtgtgctgcgctgggaggacgtccagcccgatcca
aggtgttggtga
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