Salvia hispanica (chia): 125214058
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Entry
125214058 CDS
T09851
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125214058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125214058
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125214058
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125214058
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
125214058
NCBI-ProteinID:
XP_047970883
LinkDB
All DBs
Position
3:44535726..44545500
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AA seq
869 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELENQIDSFEAEIEGLSVKKGKTRPPRLTHLEASITRHKA
HIMKLELILRLLDNDELSPEEVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVES
LEDLVTGPPSLVKGVTASSAVINMKTSLAATPVQTSATTTATIQQVASSLDQVDETAFQD
DAVPRTPPSKGSGPSSPAPQTPPAGLSTPGISSVVGVSSPVAVPSATKEEDITNFPGRKS
SPALAETGLRPIGRGGLPSQPASNILPSSGNTISSNGALGTIPVSSEMGKRTILGSDDRP
GSSGMVQALASTLSNRAVMPQASKSSDGLGLSDTGSVNDSTVVGSRVFNSPVPGMQWRPG
NSFQNQNEPGQFRGRTEIAPDQREKFLQRFQQVQLHGQNNLLGIPSIAGGKQYSAQQQNL
LLQQFNAQSSSVTPQLGLGVGVQTSGINSVTTSASVQPQPSAIHQPTNQQTFISSTPKDA
ETVPNKVEEIQQQQSLTEDSAADSAVNSGLGKNLVAEDELKSPYALEAAAAVASGSLADP
SQVMREIDLSPGQPLQSASSSGSLGVIGRRSVSDLGAIGDYISATTPNSGAMHDQSYNLQ
MLEAAYYRLPQPKDSERAKTYTPRHPAATPPSYPQVQAPMVNNPAFWERLGADTYGTDTL
FFSFYYQQNTYQQYLAARELKKQSWRYHRKYNTWFQRHEEPKVATDDFEQGTYVYFDFHI
ASDEQHGWCQRIKTEFTFEYSYLEDDLII
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagccggaagctgcagggcgagatcgatcgagtcctgaaaaaggttcaagaa
ggcgtcgacgtgttcgacagcatttggaacaaggtttatgatacagacaatgcgaatcag
aaggaaaaattcgaggccgatttgaaaaaggagattaagaagttgcagaggtacagagac
cagatcaagacatggatacaatccagcgagatcaaggataaaaaggttagtgcctcttat
gagcaggctctgatggatgcccggaagcaaattgagcgtgaaatggaacgatttaagata
tgtgaaaaagaaacaaagacaaaagcgttctcaaaagaaggccttggccaacaacctaag
acggatccgaaggaaaaagctaaatcggagactagagattggctgaataacgtggtcagt
gagctggaaaatcaaattgatagctttgaagctgaaattgaaggactttcagttaagaaa
gggaagacaaggccaccgagattgacgcatttggaggcatccatcactcggcataaggct
catataatgaagctggaattgattctgaggctcttggataacgatgaattgagtccagag
gaagtcaatgatgtgaaggatttcttggatgactatgttgaaagaaatcaggaagacttt
gatgagtttagtgatgttgatgagctttacagttccttacctctagacaaggtggagtct
cttgaagatctagttacaggtcctcctagtcttgttaagggagtcactgcttcgagtgca
gttataaatatgaaaacttctctggctgcaacacctgttcaaacttcagcaacaaccaca
gctaccattcaacaggttgcttccagcctcgaccaggttgatgaaacagcttttcaggat
gatgcagttccaagaaccccaccttctaaaggtagtggccccagttctcctgcaccacaa
acaccaccagcaggcctttcaactcctggcatctcaagtgttgtcggtgtgtcatctcct
gtggctgtgccaagtgctacaaaagaagaggatattacaaatttccctggtcgtaaatca
tcaccagcacttgctgaaactggattaaggcctattggcagaggtgggttgcctagtcaa
ccagcttctaacatccttcctagttctggcaacacgatttccagcaatggagcccttggt
accattcccgtgtcatctgaaatgggcaaaagaactatcttgggatcggatgatcgacct
gggagtagtggcatggtgcaggctcttgcatctactttaagtaatcgagcagttatgccg
caagcttcaaagtcaagtgatgggcttgggttatctgataccggaagtgttaatgactct
acagttgtgggcagcagagttttcaattctcctgttcctggtatgcaatggcggcctgga
aattccttccaaaaccagaacgaaccaggccagtttcgtggacgaactgagattgcacct
gatcaaagggagaagtttctccaacgttttcagcaggtacagctgcatggccagaataat
cttctgggtataccttctattgctggtggaaagcagtactctgcacaacagcaaaacctt
ctattacaacagttcaatgctcaaagctcatctgtcacacctcaacttgggttgggggtt
ggagtccagacttcgggtattaacagtgtaacaacatctgcttcagtgcagccccagcca
agtgcaatccaccaaccaactaatcagcagacattcatatcttcaacgcctaaggacgca
gaaactgtccctaacaaagttgaggaaattcagcagcaacagtccctcacagaagattct
gctgcagattctgctgtcaactctgggctaggaaaaaatcttgttgcagaggatgaattg
aaatctccttacgcgttagaggctgcagctgcagttgcttctggttctcttgctgaccct
tctcaagtgatgcgggagatagatctatctccagggcagcctttacaatcagcgtcatct
tctggaagtcttggtgttattggtcgaagaagtgtgtctgaccttggtgctattggggat
tacattagtgcaacaactccaaattctggggcaatgcatgatcagtcatataatttgcag
atgcttgaggctgcttattacagacttcctcaacccaaggattcagaacgcgctaagacc
tatactccaagacatccggctgcaactcctccgagctatcctcaagtacaagcccctatg
gttaataatcctgccttttgggaacgtcttggtgcagatacttatggcactgacaccctg
ttcttttcattttattatcagcagaatacctatcagcaatacttggctgctagggaactg
aaaaaacaatcatggagataccacagaaaatacaacacatggttccagcgacacgaggag
ccaaaagttgctacagatgattttgaacaggggacatatgtatactttgatttccatatt
gccagtgatgaacaacatggatggtgtcagagaataaagacggagttcactttcgagtac
agttatctagaggacgatttaatcatatag
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