Salvia hispanica (chia): 125214076
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Entry
125214076 CDS
T09851
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125214076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125214076
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125214076
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125214076
mRNA degradation factors
3'-5' decay
Ski complex
125214076
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Ski2_N
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
125214076
NCBI-ProteinID:
XP_047970907
LinkDB
All DBs
Position
3:complement(4764363..4780628)
Genome browser
AA seq
1348 aa
AA seq
DB search
MDRVPAANGLSFRVGFTGHSGHLTVEPLPPVDRPNRLHDLPDFILPPAFPEETPETIKEY
VKEKHLLPRLDEDVFSPQNAGRQWEFDWFDRAEIQPEPSIPRSVIVPSWEVPFRRKKNGP
DSQRWEPQSVEVDVSEVVLGTQDSGALPRIVGPAKDFVRGSINSRPFRPGGLDNADSLGK
IYPDGACNGEWARGLLHGEAALILPPGFKDGPDLGNLKAHPLRWEVYENLTVERRAPDAR
LNELSVQFDDLFKKAWEDDVKISEEDGNVSGPEDQLDLPNESVQTETEVELVAVVDAFKK
EPSILDEILTVESAESTSRSGDTDTGQRQNKEVWAVTGSTDEIIERFPELVPDMALDFPF
ELDPFQKEAIFYLERGKSVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQK
YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVND
VERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKEKEIRVTGTTKRPVPLEHC
LFYSGELYKICENEKMIPQGLKAAKDLHKIKNSPTVSGSGSYSGSSVANERAKRHESFSH
AKQNKHAASQNAVNFSGANRGTQSGTSNNWGSRRSEASIWLSLINKLSKKSLLPVVIFCF
SKNRCDKSADNLTGTDLTTSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRVQGLLRRGIGV
HHAGLLPIVKEVVEMLFCRGVVKILFSTETFAMGVNAPARTVVFDSLRKFDGKEFRQLLP
GEYTQMAGRAGRRGLDKIGTVVVLCRDEIPEEKDLKHVIVGSATRLESQFRLTYIMILHL
LRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPKKIVECIKGEPAIEDYYVMYS
EAEKHSNMIIEAVMLSPASQQYLSPGRVVIVKSQLAQDHLLGAIVKTPSANYKQYLVLVL
TPELPSILTSQSDSKDKKDVDFQVLVPKSRRGLQDEYCSTVTSRKGSGTVNIKLPYRGSA
SGVSYEVREVGNNEFLSICNKKIKIDQVRLLEEGSAGAFSSTVQQLSSLKSDGNKYPPAL
DPVKDLKLKNPDVVEVYYRWTNLLQKMSESKCHGCVKLEENIKLARELKRHKEEVNDLKF
QMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQLKGRVACEMNSGEELICTECLFENQLN
DLEPEEAVAIMSAFVFQQRNTSEPSLTPRLAQAKKRLCDTAIRLGKLQAEFKVQVDPEEY
ARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFRNAAAIMGNS
ALHKKMETASNAIKRDIVFAASLYITGV
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atggatcgggtcccagccgccaacggcctttctttccgggtcgggttcaccggccacagc
ggccacctcaccgttgagcctcttccacccgtcgaccgccccaaccgcctccacgatctc
cccgacttcattctccctccagcattccctgaagaaacaccggagacgataaaggaatat
gtgaaggagaagcatctattgccgaggctggacgaagatgttttttcgccgcaaaatgct
ggcagacaatgggaatttgactggtttgacagagctgaaattcaaccagagccgtcgatt
ccgcggtctgtgattgtgccatcttgggaagttccttttaggcgcaaaaagaatgggccg
gactcgcagaggtgggagcctcagtcagtggaggtggatgtatcagaagtggtacttgga
acccaggactcaggtgctctgccacgaattgttgggcctgcaaaggattttgtgagagga
agtataaatagccgtccttttcgacccgggggacttgataatgctgattctttgggaaaa
atttatcccgatggtgcttgcaatggtgaatgggctcgtgggcttctgcatggagaggct
gcactaatcctaccaccaggctttaaggatggaccggatctaggcaatctcaaggcacac
cctttgaggtgggaagtttatgagaacctaactgtggagagaagggcgccagatgcaagg
ctgaacgagctatcagtgcagtttgatgacttgttcaagaaagcctgggaagatgatgtc
aagatatctgaggaagatggtaatgtgtcaggaccagaagatcagttggatttgcccaat
gaatctgtccaaacagaaactgaagtagagttagttgcagttgttgatgctttcaagaaa
gaaccttctattctagatgaaattttgactgtcgaatcagctgaatcaacatcaagatca
ggagatacagatactggtcaacgacagaataaagaggtttgggcggttactggcagtact
gatgaaattatcgaaaggtttcccgaacttgttcctgatatggcactcgattttccattt
gaacttgatcctttccagaaggaggccatattttaccttgaaagagggaaatctgttttt
gtggctgctcatacatcagctggaaaaacagttgttgcagaatatgcatttgcactggct
tcaaaacactgtacaagagctgtgtatacagctcctattaagaccatcagcaatcagaag
tacagagatttttgtggaaaatttgatgttggactcctaacaggggatgttagcttgagg
cctgaggcttcttgtctgatcatgacaacggagatattaagatcaatgctctataggggt
gctgatatcatacgtgacattgaatgggttatatttgatgaagtacattatgtcaatgat
gttgaaagaggggtggtttgggaagaagttatcatcatgcttcccagacatatcaacttt
gtgctactttcagcgacggtaccaaacacaattgaatttgctgactggattgggaggaca
aaggaaaaggaaattcgagttacagggaccacaaaaagaccagtcccgctggaacattgc
ctcttttattctggagagctttataaaatctgtgaaaatgaaaagatgatccctcaggga
ttaaaagctgccaaagatcttcacaagataaagaactcacctacagttagtggttcagga
tcttactctgggtcttcagtggccaatgaaagggccaagaggcatgaaagtttttctcat
gcaaaacagaataagcatgctgcatcacagaatgcagtgaacttctctggagctaaccgg
ggaactcaaagcggcacaagtaacaattggggttcgaggagatcagaagcttctatatgg
ctgtcacttatcaacaagctttcaaagaagtccctcctacctgttgttattttctgcttc
tccaagaaccgctgtgataaatctgcagacaacttgactgggacagacctcacaacgagc
agcgaaaaaagtgaaatcagggtcttttgtgataaagcattctcgaggctcaaaggatca
gacagaaatctgccacaggttgttagagtccaaggtcttctgcggaggggcattggagta
caccatgcaggcttgcttccaatagtcaaggaagttgttgaaatgctcttttgtcgtggg
gttgtcaagatcctattttcaacagagacatttgcaatgggagtcaatgccccagccaga
acggttgtttttgattccttacggaaatttgatggcaaggaatttcgacaattacttccc
ggagaatatacacagatggccggtcgtgcaggcaggagaggacttgataaaattggtact
gtagttgtgctttgccgtgatgaaattcctgaagagaaggatttaaagcatgttatagtt
ggcagtgcgactaggctcgaatctcagtttcgactcacttatatcatgatcttgcacctt
cttcgggttgaagagttaaaggtggaagacatgctgaaaagaagttttgctgaatttcat
gctcagaagaaacttccagagcagcaacaacttctaatgcgaaagcttgcccaacctaaa
aaaattgttgaatgcattaaaggtgaaccagctatagaggactattatgtgatgtactca
gaagctgaaaagcacagcaacatgataatagaggcagttatgctctctccagcttcccaa
caatatctatctccgggaagggtggtaattgtcaaatcacaattggcccaagatcacctg
cttggtgctattgtgaaaaccccttcagctaattacaagcaatacttggttctagtgcta
actcctgaattgccttcgatcttgacaagtcaatcagatagtaaagacaaaaaagatgta
gacttccaagttttagttccaaaatccagacgtggcctgcaagacgaatattgttctaca
gtcacatcacgtaaagggtctggaaccgtcaacataaaactaccttaccgtggttctgct
tctggagtcagttatgaggttagagaggtggggaataatgagtttttatccatatgcaat
aagaaaataaagatcgaccaagttcgactccttgaagagggtagtgctggtgccttttca
tctactgtacagcagctgtcgtctctgaaatctgatggaaacaagtaccccccagctttg
gatccagtaaaagatttgaagctgaaaaatccggatgttgttgaggtttactatagatgg
accaacttattgcagaagatgtcagaaagcaagtgccatggttgtgtcaaactggaagag
aacattaagttagctcgggaattgaaacgacacaaagaggaagtaaatgatctaaaattt
caaatgtccgatgaagcacttcagcagatgcctgactttcagggccggattgatgttttg
aaagaaattggatgcatagatgctgatcttgtagtacaactcaaaggtagggttgcttgt
gaaatgaattctggagaggagttgatatgtacggaatgcttatttgagaatcaactaaat
gacctggagccagaagaagctgtggcaattatgtctgcattcgtctttcagcagaggaac
acttctgaaccttctcttacaccaaggctcgctcaagctaaaaagagattgtgtgacacg
gcaataagactcggaaagcttcaagcagaattcaaagtgcaggttgatcctgaggaatat
gccagggataatctaaagtttggtctggttgaagttgtgtatgaatgggcaaagggcacc
ccgtttgcggacatctgtgaactcaccgatgttcctgagggcatgattgttaggacgata
gtgaggttggatgaaacatgccgcgaatttagaaatgcagcagcgattatggggaactct
gcacttcacaagaaaatggaaactgcttcaaacgcgataaagagggatattgtgtttgct
gcaagcttgtacattactggggtctaa
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