Salvia hispanica (chia): 125214136
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Entry
125214136 CDS
T09851
Name
(RefSeq) uncharacterized protein LOC125214136
KO
K18734
protein SMG8
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125214136
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125214136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
125214136
NCBI-ProteinID:
XP_047970991
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All DBs
Position
3:8520970..8526920
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AA seq
1200 aa
AA seq
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METHSQSIRVLVRPPPPPAPAHPLPPQPPPPPPDASPPTKNGVVVVGFVGRRRREVSHLI
NKIVDSYAFGSGGLDTPFRFEPDRIDSEMRRWLDSRNLSFYLDEDRGILYLQFSMADCTL
AEAMLSEGRMGFESDLEDRELGDLKGLIFMFTVCHIVILIQEGSRFDTQLLKKFRVLQAA
KHSIVPFIRSQNITSIASRPRSSAQSRIPASGSLFSNAVPGKIQGIQNRNASANSVMSGL
GSFTSLLPGQCTPVVLFVFVDDFSEIFNTEQSSETSSLNVSSSLNSSVRPGMGAKGSSSV
VMLARPVNKSEGGLRKKLQSSLEAQIRFSIKKCRTLSVFEGSHGGSRTGAVASSAPLFTL
DASKAVSLVDACSTQSCESLEFAIGLVEQVLNGKATPDSLLHESHHQNTNKEDILSVKEF
IHKQSDLLRGRGGLLGNGSSGAAGVGMVAAAAAAAAASISASAASAKSVNPPELPTLEIW
STSSQSILQRILSVKSGCTYQGKINHMQEKDASISLTESVPTSSDPYESASSLLENGIGM
NTRFSISWCEKAFPVAKEVYLNDLPPCYPSFQHEVHLKKALQAFMSMVKGPAVHLYVKKL
NDECMSIWSSGRQLCDAVSLTGKPCMHQKHDIKSISSDEIKHHSSGFVYLHACACGRSRQ
LRPDPFDFDSANVVGNTFVDCDKLLPRVKLPEGIVKGPIQPSSWNLIRIGGARYYDPSKG
LIQSGFCATEKFLLRWTIFLEKPPLNDFQQGSSDRNPEFETALEADDQTSDVARLGAGRA
QNGVGTPIKPYSDITGNGSKKILSAGRGLSNVTMRKPFSEVVAGTAANSAFPPLFSRKQP
IHDAEKGVKLHNGRHRDLDKLGDAVYSQETLKVKDTAPVDNLQHNGTANNATEYGDSFPH
IGSNIPSLNVSGGEQIKATNPPMKAATVYVGFEHECPRGHRFILTRAHLSDLGSPFSVPE
ENGLPLPVENSDKKQDPAKLGKLGNSGRTRRQGHGLVMGGGISKAKNLEKSKEKVVNGNR
NRNNRNLVEDLDDLKSTSIDGHGGAFSLLNRNLPIYMNCPHCRESRPKNNTSNVKYASAI
SQLQRIFVVTPSSPIVLAANPVIQFELSCLPPSIPDREQKLQFSLGCPAILPPDSFLSLR
LPFVYGVELEDGSLHSLEPFENQPHLTACIKRGTALQVMPNQGALNPESAWLMSKNFPAP
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggaaacacactctcaatcaatccgcgtgctagttcgcccaccgccgccgcccgccccc
gcgcaccccctccctccacagcccccgccgccgccgcccgacgcatctccgcctactaag
aacggcgtcgtggtggtcggattcgtagggaggcgccgccgagaagtctctcatctcatc
aacaaaatcgtcgactcctacgcctttggctccggcggtttggacactccgtttcgcttc
gagcccgacaggatcgactcggagatgaggagatggctcgacagcaggaatttgagcttc
tatctcgacgaagacagggggattttgtacctccaattctccatggctgactgcacacta
gctgaggcgatgctgtcggaggggaggatgggttttgagtcggatttggaggatcgcgag
ctcggggatctcaagggattgatttttatgttcactgtctgtcacattgtaatactaatt
caggaggggtcacgcttcgatactcagttgctaaaaaagtttcgggttctgcaagctgct
aaacattcaatagttccatttattagatcacaaaatataacatccatagcgtctaggcca
cggtcttcagctcagtcacgaatacctgcttctgggtcattatttagtaatgctgttcct
ggtaaaattcaagggattcagaatcgcaatgcttcagccaattcagtaatgtcaggttta
ggttccttcacctctttgctacccggtcaatgtaccccagttgtactctttgtgtttgtt
gatgatttctctgagatttttaatacggaacagtcttcagagacctcgtccttaaacgtg
tcgtcaagtttgaacagctctgtgagaccaggaatgggtgctaaaggatctagttctgtt
gttatgcttgcacggcctgtgaacaaatctgaaggtggactgaggaaaaaattacaatca
tcccttgaggcacaaattcggttttcaataaaaaaatgccgaacgctttcagtatttgaa
ggcagtcatggtgggtcaaggactggtgcggttgctagttcggcccctctttttacactg
gatgcatcaaaggctgtttcactcgtggatgcttgctcaactcagagttgtgaatctctc
gagtttgcaattggccttgttgaacaagtattaaatgggaaagcaaccccagattctctt
ttgcatgaaagtcaccatcaaaatacaaacaaggaggatatcctctctgtgaaggagttc
atccacaagcagtctgatcttctaagaggaagaggtggtttgctgggtaatggcagcagc
ggtgctgcaggtgttggtatggttgctgctgcagcggcggctgcagcagcctcgatctct
gcatctgctgcttctgcaaagtcagttaacccacccgagctcccaactttagagatatgg
tcaacttcttctcagtcgattcttcaaagaattctttctgtaaaatctggttgcacatat
caaggcaaaatcaaccacatgcaagagaaggatgcaagtatatcactaacagaatctgta
ccaacgtcttctgatccatatgaatctgcatcgtcacttctggagaatggtatcggaatg
aacactagattttcaatctcgtggtgtgaaaaagcctttccagttgcaaaggaggtgtat
ttgaacgatcttcctccttgttatccaagttttcagcacgaggtccatttaaagaaagcc
ttgcaagcctttatgtctatggtgaagggacctgctgtgcacctgtatgtaaaaaaattg
aatgacgaatgcatgtctatctggagttctggaaggcaattgtgtgatgcagttagtctg
actgggaaaccttgcatgcatcaaaagcatgacataaaatctatttccagtgatgagatc
aaacatcattcaagtggatttgtttacctccatgcttgtgcatgtgggcgttctaggcaa
ttgcgccctgatccttttgattttgattcggcaaatgttgtgggcaatacttttgttgat
tgtgataagcttcttccaagagttaagttgccagaaggaattgttaagggacccattcaa
ccttcatcatggaatttgattcgtattgggggtgcaaggtattatgatccttcaaaaggt
ttaatccaaagtggattttgtgcaactgagaaatttctgcttaggtggactatatttctt
gagaaaccaccgctaaatgacttccagcagggttcctcagacagaaatcccgaattcgaa
actgctttagaagcagatgatcaaacatccgatgttgctcggttaggagctggaagggca
caaaatggagttgggactcccataaagccctattcggatatcactggaaatggtagtaaa
aaaatattgagtgctggtcgaggattatccaacgttacaatgagaaaaccattttctgaa
gttgttgctggaactgctgctaactctgcatttcctccactcttttctagaaaacagcct
atacacgatgctgagaaaggtgttaaattacataatggacggcacagggatctggacaaa
cttggcgatgctgtctacagtcaagaaactctgaaggttaaagatactgcgcccgttgat
aatttgcagcataatggcactgctaacaatgccacggagtatggcgattcttttcctcat
attggaagcaatataccttctttaaatgtgagtggtggtgaacagattaaggccaccaat
cctccaatgaaggctgccactgtatatgtgggctttgaacatgagtgtccccgtggccat
aggtttatattaacgcgggctcatctaagtgacctggggtcaccattctcagtgcctgag
gagaatggtctccctttgccagtggaaaactcagataaaaaacaagatcctgctaaattg
ggtaaacttggcaacagtggtagaaccaggcggcagggacatgggctagttatgggtggt
ggtattagtaaggcgaagaaccttgagaagtcaaaagagaaagtggtcaatgggaacaga
aacagaaacaatagaaaccttgtcgaggatcttgacgaccttaaatccactagtattgat
ggtcacggtggtgccttctcccttttgaatagaaacttaccgatatatatgaactgtcca
cattgtagggagtcgaggcccaaaaacaatacatctaatgttaagtatgcaagtgctatc
tcacagctgcagaggatctttgtggtgactccttcatctccgattgttttggctgcaaac
ccagttattcaatttgagttatcttgtttacctccctctatccctgatcgtgaacaaaag
ctacaattcagcttgggctgccctgcgattctgccgccagatagtttcctctctttgagg
cttccttttgtttatggtgtggaactggaggatgggagtctgcattcacttgaacctttt
gaaaatcaaccacacctcactgcatgtataaagaggggaacagctttgcaggttatgcca
aatcagggcgctcttaatcctgaatcagcgtggttgatgtcaaaaaactttcctgctcca
tag
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