Salvia hispanica (chia): 125214223
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Entry
125214223 CDS
T09851
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
shis
Salvia hispanica (chia)
Pathway
shis04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
125214223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125214223
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
125214223
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
F-box
LRR_8
Motif
Other DBs
NCBI-GeneID:
125214223
NCBI-ProteinID:
XP_047971114
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Position
3:complement(12470454..12473336)
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AA seq
582 aa
AA seq
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MAYSFPEEVLEHVFSFLSSARDRNAVSLVCKSWYEIERWCRHRIFVGNCYAVSPEIVIRR
FPELRAVEMKGKPHFADFNLVPEGWGAYAYPWIAAMAEAYPFLEEIKLKRMVVTDETLEL
ISKSYKNFKVLVLTSCEGFTTDGLASIAANCRHLRELDLRESEVEDLSGNWLSDFPDSCT
SLVSLNMSCLGSEVSFSALERLVARSPNLRTLRLNRAVPLEKLANLVRHAPQLVELGTGA
YSAEIRSDTFSSLADALSACKQLKALSGFWDVVPSYLPAVYSVCSGITSLNLSYAAIPSS
DLVKLISQCQNLQRLWVLDYIEDSGLEALAASCKDLQELRVFPSDPFGADPNVSLTEQGL
VSVSEGCPKLESVLYFCRQMSNAALIAIARNRPNFIRFRLCIIEPQAADYLTLEPLDAGF
GAIVENCKELRRLSMSGLLTDRVFKYIGTHAKKLEMLSIAFAGESDLGLHHVLSGCDSLR
KLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFGACKLLAQKMPRLNVEVIDERGPP
DSRPESCAVERVYVYRTVASRQRLDMPDFVWTLDEDSSMRYS
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggcgtactcgttcccggaagaagttctggagcacgtcttctcgttcctgagctcggcc
agggaccggaacgccgtctccttagtgtgcaagtcgtggtacgagatcgagcgctggtgc
cgccaccgcatcttcgtggggaactgctacgccgtctcgccggagatcgtgatccgccgg
tttcctgagctgagggcggtggagatgaaggggaagccgcatttcgcggacttcaacctc
gtgccggagggatggggcgcctacgcttacccgtggatcgcagccatggcggaggcgtat
ccgttcctggaggagatcaagctgaagcgcatggtggtcacggacgagaccttggagctc
atctccaagtcgtataaaaattttaaagttctggtgctgacgtcatgcgagggtttcacc
accgacggtctcgcctctattgcggctaattgcaggcatttaagggaactagatttgagg
gagagtgaggtggaggatctgagtgggaattggcttagcgattttcctgatagctgcact
tctctggtgtcacttaacatgtcttgtttgggttctgaggtaagtttctcggcgttggag
agactggttgcacgttcacctaacctgaggactctccggcttaaccgtgctgtacccctt
gagaagcttgctaaccttgtccggcatgccccccaattggttgaattgggtactggtgct
tattcagctgaaattcgatctgatactttttcaagcctggctgatgcattgtcagcctgt
aagcaactcaaagctttgtctggtttttgggatgtggttccttcgtatcttccagctgtg
tattctgtctgttctggaatcacttcactgaatttgagttatgctgccattccaagttct
gatcttgttaagcttattagccaatgccagaatttgcagcggctatgggtcttggactac
attgaagacagtggactagaagctcttgctgcatcttgcaaggatctgcaagaacttagg
gttttcccttccgatccttttggggcagaccctaatgtgtctttgacagaacaagggctt
gtatctgtctctgaaggttgccccaagcttgaatctgttctgtacttttgccgccagatg
tcaaatgctgcattgattgctattgccaggaaccggcctaactttattcgtttccggctc
tgtatcattgagcctcaagctgctgactacttaacccttgaaccacttgatgctggtttt
ggagccattgttgagaactgtaaagaattgcgccggctttccatgtccggcctcctcact
gaccgcgtgttcaaatatatcggaacccatgcgaagaaattggagatgctttcaatagcc
tttgctggggagagtgacttgggcctccatcacgtgttatctggctgcgacagcctccgg
aaactggagatcagggactgtccatttggtgacaaggctctattagccaatgctgcaaag
ctagagacaatgcgatccctttggatgtcttcttgctccgtgagttttggagcttgtaag
ctgctcgcacagaagatgcctaggctgaacgttgaagtcatagacgagagaggcccaccc
gattcaaggcctgaaagctgcgctgttgagagagtgtatgtctaccgcactgttgctagc
aggcaaaggctcgacatgcctgactttgtctggactctggatgaggattcatccatgagg
tattcctaa
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