Salvia hispanica (chia): 125214305
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Entry
125214305 CDS
T09851
Name
(RefSeq) nijmegen breakage syndrome 1 protein
KO
K10867
nibrin
Organism
shis
Salvia hispanica (chia)
Pathway
shis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125214305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shis03032
]
125214305
03400 DNA repair and recombination proteins [BR:
shis03400
]
125214305
DNA replication proteins [BR:
shis03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
125214305
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
125214305
BRCA1-C complex
125214305
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FHA
BRCT
PTCB-BRCT
Nbs1_C
LTD
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
125214305
NCBI-ProteinID:
XP_047971219
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All DBs
Position
3:complement(23434556..23440980)
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AA seq
562 aa
AA seq
DB search
MVWSLFPVDPLPGENEYYIFKKGTYKVGRKGCDIIITKDKGVSRVHAEIIVNEMVCMDHL
ENIHSDNSSKVQIRDCSKYGTFISRNLDSKEKVHEFPNKEATLKDGDVVTFGTGIAQYRF
SYVPLVLCASSTKPSEMNKLKTTMLAIGASVTQAWTSKCTHMVIDDFNPINDEVINSIVA
RKPLVRFSWIEVVAGKTFSTEIPSSLSHAPTLTLEGASLKVADAQSREQCLKGYTFMLDS
KHKYKFKEKMCMLLEAGGAKVVYTETSDQCSQNTRENLVCVMPAGMTSSSGNFKKFSYLP
TVNEMELISAVVSGHLDPSVMASAPVLVTSSCSTDETVVADSDVEMETATSVRTSAAVNL
ISSAEDECETKIGIHETERSERNCKAENVVHVIESTEHDSVAKTEAGATDPGSQGFLQHP
KGETLKLDTPYWSSISRDRDEPTRNDEGHPSDSENVDIIFSESLIVRESNSAQFDHSTRN
VPAANFKRFRKMSVPSGNSFSNLIPFSEYPYKDSDYGNEDVAESIKEEKKRKQMEAIADD
LFNNDKGRRRASATLPSLFARR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggtttggagcctatttccggtagacccacttccaggtgaaaatgagtactatattttc
aaaaaagggacgtacaaagtcgggcgaaaaggatgtgacataatcataaccaaagataaa
ggggtttcaagggtccatgctgaaattattgtaaatgaaatggtttgcatggatcattta
gaaaatatacattcagataattcttcaaaagttcagatcagagactgctcgaagtatgga
accttcatcagcagaaatctggattctaaagaaaaagttcatgaatttccaaataaagaa
gcaacactgaaggatggagatgtggttacatttggtactggaattgcacaatataggttt
tcctatgttcccctcgtgctttgcgcatcgtcaaccaagccttcagagatgaataagctt
aaaaccacgatgttggcaatcggtgccagtgtcactcaagcttggacttctaaatgcaca
catatggttattgatgacttcaaccctatcaatgatgaggttatcaattcgattgtggct
agaaaaccccttgtccgatttagctggatagaggtagttgcaggaaaaacattttccact
gagattcccagctctctctcgcatgctccgacattgacactggaaggtgcatctctcaaa
gtcgccgacgcacaatctcgagaacagtgtttgaaaggatacacttttatgttggactcc
aagcacaagtataaatttaaggagaagatgtgtatgcttttggaagctggtggtgcaaaa
gttgtttacactgaaacttcagatcaatgcagtcagaataccagagagaatctggtgtgc
gtgatgccagctggaatgactagcagcagtggaaattttaaaaaattcagttatctgcct
acggtgaatgagatggaactgatttcagccgtggtttctggacatctagatccttcagtt
atggcatcagcacctgtgctggtcacatcttcatgctccacagatgagacagtggttgca
gattctgatgtagaaatggaaactgccacatcagtccgtacgtctgctgcagttaatttg
atatcttctgctgaagatgaatgcgaaacaaagattgggatccacgagacagaacgttca
gaaagaaattgcaaagcagaaaatgttgttcatgtgatagaatctaccgaacatgacagt
gtagcaaaaacagaggctggagcaacagatcctgggagccaaggattcttacaacatcct
aaaggggaaacccttaagcttgacactccttattggagttctatatcaagggacagagat
gaacctacgaggaatgatgaggggcatccatcggatagtgagaatgtggatataatattc
agcgagtctctaattgttcgagagtctaactcagcacaatttgatcattctacaagaaat
gtcccagctgctaacttcaaacgttttaggaagatgagtgttccatcggggaacagcttc
agcaaccttattccgttttcagagtatccatacaaagattctgactatggaaacgaagat
gtggctgagtccatcaaagaggagaagaagcgcaagcagatggaggccattgcagatgac
ttatttaacaacgacaagggaagacgacgtgcatctgctacccttccttcgctctttgct
cgtcgttga
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