Salvia hispanica (chia): 125214468
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Entry
125214468 CDS
T09851
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125214468
09123 Folding, sorting and degradation
03018 RNA degradation
125214468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125214468
03041 Spliceosome [BR:
shis03041
]
125214468
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125214468
mRNA degradation factors
5'-3' decay
Lsm complex
125214468
Spliceosome [BR:
shis03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125214468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
125214468
NCBI-ProteinID:
XP_047971467
LinkDB
All DBs
Position
3:complement(12279685..12282327)
Genome browser
AA seq
148 aa
AA seq
DB search
MLPLSLLKSAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
VRGNTIKYLRVPDEVIDKVQEETKSRSDRRPPGVGRGRGRGGREEGPKPKGVGRGLEDGG
GRGAGAARGRGGVGGRASGNRGGGRGGR
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttcattgctcaagtctgcacaaggacaccctatgttggtggaactgaaa
aatggggagacatacaatggtcacttggttaactgcgacacttggatgaacattcatctc
cgtgaagttatctgtacctcaaaggatggagataggttttggaggatgccagagtgctat
gttaggggtaacacaatcaagtatctcagagttccggatgaggtgattgataaagttcaa
gaagagacaaaaagccgttctgacagaaggccacctggagtagggcgtggaagaggaaga
ggtggaagagaagaaggccctaaaccaaaaggtgtgggccgtggtttggaggatggagga
ggccggggtgcaggtgctgctcgaggcaggggtggagttggaggaagagcctctggaaac
agaggtggtggtcgaggaggccgatga
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