Salvia hispanica (chia): 125214492
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Entry
125214492 CDS
T09851
Name
(RefSeq) pre-mRNA-processing factor 39-2-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125214492
Spliceosome [BR:
shis03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
125214492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_2
Motif
Other DBs
NCBI-GeneID:
125214492
NCBI-ProteinID:
XP_047971497
LinkDB
All DBs
Position
3:complement(18242143..18249061)
Genome browser
AA seq
1125 aa
AA seq
DB search
MAAPTSATANLTISLSEKVSNVISGCPQDYNSWRSLISELETASPEDINTISLAYESFLS
RFPLCHWHLEKYAYQKAKFCNSQEAVDIYERAVEVAMYSVGFWSDYFTFAAACFESPGDI
RRLFERAISFVGKDYFCHVLWDKYMKYEFSQEGWSFLAQSYIWALRCPTKKLQLYYDNFK
QFVANLEEEIGYEKSDSIGEQISVPCAAMELSKGEIALVIKDMLDSSNRTVKSKALDRYR
YIGEEFYLEACRMDGKVKRFESRIQRRFFDVTPLDDDQLINWHLYLDFIEKEDNLDQTMK
LYERCLIPCARYPEFWIRYVEFLESKGGRELAISSLARATQIFLKTVPEIHLFDARFKEH
IGDAHGARAALALCDPKTDSNFIESIAAQANLERRLGNFAAASATYEKALKKAREKQKLR
LLPTLYMHFARLTFLTTGSTAACRDVLIEGIQQVPHCRFLLEELVKFAITHEGASHLNII
NSVIADAISPGLDENEGLDAKDRENLSCLFLEFVNLCGTLHDIKEAWNRHIKLFPQLLRL
KTPSKHPAPGSFPICLTRDKKGKYDHHVLSRPSTNHSNQLHGEERVPESPAPLMDQSSNA
KEKVQLLSTKEVLSNVDESRDTEPATVSCQSREDGLGPMVVAVEFSDHATGNALIVHDSV
KDFSSQSRGDVPEPMDVSAEFGIKSKEDEVGKSIERTESIEACQSSLPNVQPELDHELNQ
SKCQEKEKEKESRELIPMTCDEYGTSPKSIHSVDSLKVRGESERDGSVSLQHNAPREVHH
PGEPSSTCGDSAEIDHVVQAPGHASLWFQDQNQAQDRELKLQQSPHIDRHKLVKNQGSGR
RSQSEVGAVVDDKATEQDEPITNQHNAQKFPARQQRSQSEDRATDLDQQMDTLTSPTSIS
MSGGQQPVSSQPFSYAQQNMNPAAPTTQQQWQEQQSLAMNQMMLQYHYQQQQLLQQQYQQ
QLQMQHPYYQMQQQYLTQQPYQVQPSQQQQHPQIQQGCEPHLNPQQAHNTQYQQPQGATY
QAQQLAYQQHSSQEQQQLLWQQQYQQYQLLQHQQQQQGSMNTQGHNVHHDPPRQPDEQLH
QYHQPNPQHKFTQHMNQNRQGTPDYAAVRASSSPRVGARSPQVSQ
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgccgacctccgccaccgcaaatttgaccatcagtctttctgagaaagttagc
aatgtaatttctggctgcccgcaagactacaattcgtggagatcgttgatttcagagctt
gaaactgcatctccagaggatataaataccatttcccttgcatatgaatcctttttgtca
agattcccgttgtgtcattggcatttggagaaatatgcttatcagaaggcaaagttttgc
aactctcaagaagctgttgatatttatgagcgagcagtggaagtggcaatgtattcagtc
ggtttctggtcagattatttcacatttgctgcagcttgttttgaatcccctggggatatt
cggcgattgtttgaaagagccatctcatttgttggaaaggattacttttgccatgtccta
tgggacaagtacatgaaatatgaattcagtcaggaggggtggagctttcttgcacaaagt
tacatttgggcattgaggtgtccgacaaagaagctgcagttgtattatgacaacttcaag
cagtttgttgcgaatttggaagaggagatcggatatgaaaaaagtgacagcataggagag
caaatatctgttccttgtgctgcaatggaattatctaagggtgaaattgctcttgtcatc
aaggatatgctagattcttccaatagaaccgtcaaatccaaagcgctggatagatataga
tatattggtgaagaattctatctggaagcatgccgcatggatggtaaagtaaaacgtttt
gagtcaaggatccaaaggcgtttttttgatgttactcctctcgatgatgaccaattaatt
aattggcatctctacctggatttcattgagaaggaagacaatttggaccagaccatgaaa
ctctatgaaagatgcttgattccttgtgcccgttaccctgaattctggatacgatatgtg
gagttcctggaatcaaaaggaggacgtgagctggctatttcttccctagcccgggccact
caaatatttttaaagactgtaccagaaatccatttatttgatgcaaggtttaaggagcac
ataggagatgcccatggtgctcgtgctgcattagctctttgtgatccaaaaactgattcc
aacttcattgaaagcattgctgcacaagctaacctggaaagacgtttggggaactttgca
gcagcttctgccacatatgagaaagcacttaaaaaagcaagggagaagcagaagctacgc
cttcttcccactctgtatatgcactttgctcgccttacattcttgacaacaggtagcact
gctgcttgtagagatgtattaattgaaggtatacaacaggtgcctcattgcagattcctt
ttagaggaattagtaaaatttgcaataactcatgaaggagcaagccatctcaacatcata
aattcagtcatagcagatgccatttcacccggattagatgaaaatgaaggtttggatgcc
aaagatcgagaaaacctatcatgcttgtttttggagtttgtcaatctttgcgggactttg
catgatataaaagaagcatggaatcgtcacatcaaattattcccccagttgctaaggtta
aagacaccgtctaagcaccctgcaccgggcagtttcccaatatgtttgaccagggataag
aaagggaagtatgaccaccatgtgcttagccggccatcgacaaaccattccaaccaactt
cacggggaagaacgtgtacctgaatctcccgcacctcttatggaccagagcagcaacgcc
aaggaaaaagtgcaactgctgtcgaccaaagaagttttgtccaatgttgatgaatctcga
gacactgaaccagctacagtttcctgtcagtctagagaagacggactggggcctatggtt
gttgctgttgaattttctgaccatgctacggggaatgctttaattgtccatgattcagtc
aaggatttctcgtcccaatctagaggagacgtaccagagccaatggatgttagtgctgaa
tttggtataaagtctaaagaagatgaggttgggaagtcaatagagagaactgaatcaatt
gaagcatgccaatccagcttacccaatgttcaaccggagttggatcatgagctcaaccag
tcgaagtgtcaggaaaaggaaaaggaaaaggaatctcgggagttgatccccatgacttgt
gatgagtatgggactagtccgaagagcattcattcagtcgactctctcaaagtccgtggt
gaatctgaacgagatggatcagtgagtcttcagcataatgcaccaagggaagtgcatcat
ccaggggagccttctagcacctgtggtgactcagctgaaatagatcacgtggtccaagct
cctggacatgcatcgttatggttccaagaccaaaaccaagctcaagatcgggagcttaag
ttacagcaatctccccacattgatcgccataaattagtaaaaaatcaaggtagtggaaga
cgcagccagtcagaagtaggggcggttgtggatgataaagcaactgaacaagacgagccc
atcacaaatcaacacaacgctcagaagtttcctgctagacaacaacgtagtcagtcggag
gatagagcaactgatctggaccagcaaatggataccttgacatctcctacttcgataagc
atgtcgggaggacagcaaccggtttcctcacaaccattttcttatgctcagcaaaacatg
aatccggctgctccaacgactcagcaacaatggcaagaacaacagagcttggccatgaac
cagatgatgttgcagtatcattaccagcagcagcaattactgcaacagcagtatcagcag
cagctgcaaatgcagcatccctactatcagatgcagcaacagtatctaacccagcagcca
tatcaagtgcagccgtctcaacagcagcaacatccacagatacagcaaggttgcgagcct
cacctgaatcctcagcaggcacataatacccaataccaacaacctcagggcgccacttac
caagcacagcaactggcgtatcaacagcactcgtcgcaggagcaacagcagcttctttgg
cagcagcagtaccagcagtatcagcttctgcaacaccagcagcagcagcaagggtctatg
aatacgcaaggacacaatgtgcatcacgatccaccaaggcaaccggacgaacaactgcac
caatatcaccaacccaatccacaacataaattcactcaacatatgaaccaaaatcgacag
ggtacaccagattatgcagcagtcagagcttcttcgtctccacgtgttggtgctcgatca
ccacaagtttcacaatag
DBGET
integrated database retrieval system
