Salvia hispanica (chia): 125214608
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Entry
125214608 CDS
T09851
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125214608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125214608
03041 Spliceosome [BR:
shis03041
]
125214608
03009 Ribosome biogenesis [BR:
shis03009
]
125214608
03016 Transfer RNA biogenesis [BR:
shis03016
]
125214608
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125214608
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125214608
Spliceosome [BR:
shis03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125214608
Complex C
U4/U6.U5 tri-SnRNP related factors
125214608
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
Pre-60S particles
Helicases
125214608
Transfer RNA biogenesis [BR:
shis03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125214608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
NPR1_interact
Motif
Other DBs
NCBI-GeneID:
125214608
NCBI-ProteinID:
XP_047971659
LinkDB
All DBs
Position
3:complement(6644480..6652874)
Genome browser
AA seq
991 aa
AA seq
DB search
MVSVKRKPLGEATEGCETPPMKQRREHGNGLIDEAVTCLHQVSYPEGYQPSASSNQQREA
KPAKEFPFSLDPFQQEAIKCLETGESVMVSAHTSAGKTVVGLYAIAMSLRNKQRVIYTSP
IKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWII
FDEVHYMRDRERGVVWEESIVMAPRNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTD
YRPTPLQHYIFPCGGDGLYLVVDEKGKFREDSFQKALNALIPTSEDRKKENGKVPKGVLV
GKSGEDSDIFKMVKMIILRQYDPVICFSFSKRECEFLAMQMAKMDLSDDNEKVNIETIFW
SAMDMLSDDDTKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATETF
SIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGICILMVDEKLEP
STVKFMLKGSADSLNSAFHLSYNMLLNQIRAADADPENLLRNSFYQFQADRAIPDLEKQA
KILEAERDSIIIEEEDSVENYYSLIKQYKTLKKEIRDTVFSPKNCLPFLQPGRLVSIQCT
KSDEDSPSFSMQDEVTWGVIINFERVKVASEDDANKKPEEASYTVDILTRCRVHKDEIAK
KTIRIVPLKEPGEPAVISIPISQIDSLSSVRLIIPKDLLPLEARENTLKKVSEVLVRFAK
EGVPILDPEDDMKVQSSSYRKATRRIEALENLFEKHKVARSPLIEQKLKVLHTKKELTAK
IRSLKKAMKSSSVLAFKDELKARKRTLRRLGYITSDDVVELKGKVACEISSAEELTLTEL
MFNGVLKDIRVEEMISLLSCFVWQEKLQEAQKPRDELELLFTQLQETARKVAKVQLECKV
QIDIENFVSSFRPDIMEAVYAWARGSKFYEIMEMTPVFEGSLIRAIRRLEELLQQLIQAA
KSIGEKDLEVKFEEAVTKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggtttcagtcaagagaaagccgttgggagaagcgacggagggctgcgagactccgccg
atgaagcagcggagagagcacgggaatggtttgatagatgaagccgtaacttgccttcac
caagtatcgtatccagagggctaccagccgtccgcttcgagtaatcagcaacgtgaggca
aagcctgccaaggaattccccttttctcttgatccttttcagcaggaagctattaagtgt
ctcgaaactggcgaatccgtcatggtctctgcgcatacatctgcaggaaagacagttgtg
ggcttgtatgccattgcgatgtcgctgcgcaacaagcaacgtgtgatatatacatctcca
attaaagctcttagcaaccagaaatatagagagttcaaagaagaattttcggatgttggg
ttgatgacaggtgatgtaactattgatcccaatgcgtcttgcttggttatgaccactgag
atttggcgaagcatgcaatacaaaggatcagaaattactagggaggtggcctggattatt
tttgatgaagtgcattacatgagagacagagagagaggggtcgtgtgggaagagagcatt
gttatggccccgaggaactcccgatttgtgtttctctctgctacagtacctaacgcaaag
gagtttgctgattgggttgcaaaggtgcatcagcaaccatgtcatattgtttacaccgat
tatcgaccaacaccccttcagcattacatcttcccttgtggaggtgatggcctttactta
gtggttgatgaaaagggtaagtttcgtgaggatagctttcagaaagctctaaatgctctg
attccgaccagtgaagacagaaagaaagaaaatggaaaagttccgaaaggtgtacttgtt
ggtaaatctggtgaagatagtgatatatttaagatggtgaaaatgatcattttgcgacag
tatgatcctgtcatatgtttcagttttagcaaaagagaatgtgaatttcttgctatgcag
atggcgaaaatggatctaagtgacgacaatgagaaagtaaacattgaaactatcttctgg
agtgctatggatatgctgtctgatgatgatacgaagcttccacaggtttcaaatatgctg
cccctgttgaaacgaggcataggtgtacatcactctggtttgcttcccatactgaaggaa
gtcattgaaatattgttccaggaaggatttatcaagtgcttgtttgccacagagaccttt
agcatagggctaaacatgcccgctaaaactgtcgtctttactaatgttcgaaaatttgac
ggagataagttcagatggatatccagtggggagtacatacaaatgagtggccgagctggt
cgccgaggaattgatgatcgggggatttgtatccttatggttgatgagaaactagagcct
tcaacagtgaaatttatgttgaaaggaagtgcagattctttgaacagtgcgtttcacttg
agctacaatatgcttttaaatcaaatacgagctgcagatgcagaccctgagaatttgctt
cgaaattctttctatcagtttcaggcagatcgtgccattcctgatcttgagaaacaagca
aagatccttgaagcagagagggattctattataatagaggaagaagatagcgtggaaaat
tattactcccttataaaacaatacaaaactctgaaaaaggaaatccgtgatacagttttt
tctccaaaaaattgtttgccttttctacagcccggaagacttgtttctatacaatgcaca
aagagtgatgaggattcaccatcattctctatgcaggatgaggtcacatggggagtcata
ataaattttgagagggttaaagttgcctctgaagatgatgcaaacaagaagcctgaagag
gcaagctatacagtggatattctcacgaggtgcagagtgcataaggatgaaattgctaaa
aaaacaattagaattgttcccttaaaagagcctggagagcctgctgtcatttcaatccct
atttcacagattgatagcttaagtagtgtccggctaataataccaaaggatcttctccca
ttagaagctcgagaaaatactttgaagaaagtgtctgaagttttggtaagatttgcaaaa
gaaggtgtacctattctagaccctgaagatgacatgaaggttcaaagcagctcttacagg
aaggcgacaaggcggatagaagcacttgagaatctttttgagaagcacaaagttgcaagg
tctcctctgattgaacagaagctcaaagtcctgcacacgaagaaggaacttactgcaaaa
attagatctcttaagaaagcaatgaagtcttcatcagtgttggcattcaaagatgaatta
aaagcaaggaaaaggactcttaggagactgggatatattacaagtgatgatgttgttgag
ctgaagggaaaagttgcttgtgaaatcagcagtgcagaagagttgacattgacagaactc
atgtttaatggggttctaaaggatataagagtggaggagatgatatctcttctgtcatgt
tttgtttggcaagaaaaactacaggaagcccaaaagcctcgtgatgagcttgagttgctt
tttacacaactacaggaaacagcacgtaaggtggctaaggttcagcttgagtgcaaggta
cagatagatattgagaatttcgtgagctctttcagaccagatatcatggaggctgtctat
gcttgggctagaggatctaaattctacgaaattatggagatgacacctgtttttgagggc
agcttgatccgagcaatcaggagactggaagaactcctccagcagctgatacaagctgca
aaatcaatcggtgagaaagatcttgaagttaaattcgaggaagctgtcaccaagatcaag
agagatattgtctttgctgcatcattgtacctatag
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