Salvia hispanica (chia): 125214677
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Entry
125214677 CDS
T09851
Name
(RefSeq) syndetin
KO
K23288
syndetin
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shis04131
]
125214677
Membrane trafficking [BR:
shis04131
]
Protein recycling
Others
EARP complex
125214677
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
TetR_C_30
Motif
Other DBs
NCBI-GeneID:
125214677
NCBI-ProteinID:
XP_047971755
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Position
3:8425490..8437225
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AA seq
1115 aa
AA seq
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MQPGDNPPTLPFPLSPLLLLNAGDFGDGGFELSRYLFLGSLLFSRQAGGMDLSKVGEKIF
SSVRSARSIGLLPPPSDRPEVPARAAAAAAVARVLAGLPPHQRHNISSSDGLSFIDGSNS
QGQALDELEKEFYEEEFDPVRHILEQIPSEEKEPAYFEEQAALRLAQLDRISEHLSRHVM
EHHEQMVNGMNLVRELEKDLKIANVICMNGRRHLTSSRNEVSRDLIVTESSKKKQALVGM
IPILSELRHAVDLQVALDTCVEEGSFTKAFQILPEYLQLLDSLSNLSAVQEMSLNIEVWL
GKTLQKLDSILLEVCQDFKEDGYLTVIDAYALIGDVSGLAEKIQSFFMQEVLSESHSTLK
TILQEDFENSNTQITRLTYSDLCTQIPESKFRQCLQAMIAVLFKLMCSYYVITNFKLEDK
VPSCHNPSGNQHGILSGVSEDTAKEVSSSLTEEGSVIASVQRGSRSSSAEVSLTSVTHAE
RTQGPIREDHSTDEGRDDGSAASSSGSPWFLLRKDALTFVSLALQRGCRNLWQLTTSRIS
VLLSSPAVSSTSIHQFLRNYEDLSIFILAGEAFCGTEAIEFRQKVKSICEGYFAAFHRQN
IYALKMVMERENWQILPPDTIQVVSFPGLVGDGAALLVSSVSSPRAQLLHDSKSVGLASG
SKKGGFSYWLENGKLFLPKVIGSSEEYSDSFQSNGLATQGSGNTNKIPRQTKSSSEVDTN
HVNGTTPEEENEDLHADFIDEDSQLPSRISKRGHSRHNSLSGNNEDSMAQTGSSLSVLRS
MDKYARLMQKLEIVNVDFYKGICQLFEIFFYFVFETFCEHNAPASGKGIPHKVKTAIARI
SQECDQWIKHQPVSTSSSSPTSSSPFTHMDVTPMSPPSHVNHTSFGLKERCSGADTISLV
AQLLHRSKTHLQSMLPRKYAALVEDFYFHMVNAVPDLTQLIHRTTAKSLLHINGYADRIA
NAKWEVKELGMEHNGYVDLLLGEFKHYKTRIAHGGIRQEVQDLLLEYGLENVAETLIEGL
SRVKRCTDEGRALMSLDLQVLINGLKHFVTIDVQPKLHIVETFIKAYYLPETEYVHWSRA
HPEYSKSQIVGLINLVATMKGWKRKTRLEILEKIE
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgggcgacaatccaccgacacttccgtttccactcagtccattgctgctattg
aatgccggtgatttcggcgacggaggctttgaattgtcgcgctatttgttcctaggatcg
ctgctcttctcgcgacaagcaggcggcatggacttgtccaaagtcggggagaagatcttc
agctcagttcgctccgcgcgctcgattggcctcctgcctcccccctccgatcgtcccgag
gttccagcacgagcagcagcagctgcagctgtggcccgtgttcttgctggactacctcca
catcaaagacataatatttcaagctctgatggactgagtttcatagatgggagcaattct
caaggtcaagctctagatgagcttgagaaggaattttatgaggaggagtttgatcctgtt
agacacattttagaacaaatcccctcggaagaaaaggaaccagcatatttcgaggagcag
gctgctcttcgattagcgcaactggatagaatttctgagcacttgtcgcgtcatgtaatg
gaacatcatgaacaaatggtaaatgggatgaatctggtcagagagttggagaaggacttg
aagattgcaaatgttatttgcatgaatgggcgaagacaccttacctcttcaaggaatgag
gtatctagggatctaattgttacagaaagttcaaagaagaagcaagcgctagtgggcatg
attcccatcttgtctgagcttcgtcatgctgtggacttgcaagttgctcttgatacttgt
gttgaggaagggagtttcactaaggctttccaaatactgccggagtatttacaactttta
gatagtttatcaaacctttcggctgtgcaagagatgagccttaatattgaggtttggttg
gggaagactcttcagaagttggattcaattctattagaagtgtgccaggacttcaaagag
gatggctatctcactgtgattgatgcatatgctttaattggtgatgtttctggtctagct
gaaaaaatacagagcttcttcatgcaggaggttctctctgaaagtcactcaaccttgaag
accattttgcaagaggactttgaaaattcaaatacccaaattacgaggctaacatacagt
gatttgtgcacccaaatacccgagtccaagtttaggcagtgtttacaagcaatgatagct
gttctgtttaagctgatgtgttcgtactatgtaattactaacttcaaactcgaagacaaa
gtgccatcctgccataaccctagtggtaatcaacatggtattctatctggggtctccgag
gatactgccaaagaagtttcttcttctctgacagaagaaggctcagttattgcatccgtt
cagagaggatctcgttcctcctcagcagaagtgagtttgacgtctgtaacacatgctgaa
cgaactcaaggtcctatacgcgaagatcattcaactgatgagggaagagatgatggaagt
gcagcatcaagtagtgggtccccatggttcttgctgcgaaaagatgccttgacgtttgtt
tcacttgccttacaaaggggatgtaggaacctttggcagcttacaacaagccgtatttca
gttttgctttcttctccagcagtttcttctaccagcattcatcaatttttgagaaactat
gaagatctaagtatattcattttggctggggaagctttttgtggaactgaggctattgag
tttcgtcagaaggttaaatccatttgtgaaggttattttgctgcattccatcgtcagaat
atttacgccttaaaaatggtgatggagagggaaaattggcagattttgccaccagacacg
attcaagtggttagttttccaggactggttggtgatggagcagctctccttgtttcatct
gtcagttctccccgtgcacaattactacatgacagtaaatcagttggactagctagtggg
tcgaagaagggtggattttcatattggcttgaaaatggtaagctgtttttgccaaaagtg
atcggcagttctgaggagtattccgactccttccagtccaatggtttggccacacaagga
tctggaaatactaataagatacccaggcaaactaaatcatcctctgaagtagacacgaac
catgtcaacgggactactccagaagaagaaaatgaggatcttcatgcagattttattgat
gaagatagtcagcttccgagtcgtatttccaaacgcggtcattcaaggcataactcttta
agtgggaacaatgaagattcgatggcacaaacaggatcctcccttagtgtcctgagatcg
atggacaaatatgcacggttgatgcagaaattagagattgtcaatgttgacttttataag
ggaatttgccaattgtttgagatatttttctactttgtgtttgagacattctgtgagcat
aatgctccagctagtggaaaaggcattcctcacaaggtaaaaactgcaatagcaagaatt
tcgcaagagtgtgaccagtggataaaacatcaaccagtatcaacatcttcgtcatcccca
acatcttcaagtccattcactcacatggatgttacccctatgagtcctcccagtcatgtg
aatcatacttctttcggactgaaggaaagatgttctggggctgacactatatctcttgtt
gctcaattattgcatagatccaaaacgcatttgcaatcaatgcttccacgcaaatatgca
gcactagtggaggacttctattttcacatggttaatgctgtgcctgatcttactcagctt
attcataggacaacagcaaaatcgctactgcacatcaatgggtatgctgatcgcattgcc
aatgctaaatgggaggtgaaagagcttggaatggagcataatgggtatgttgatttatta
ctgggcgaatttaagcactacaaaacgaggattgctcatgggggtatcaggcaagaggtt
caagatctcctcttagaatatggacttgaaaatgttgctgaaactctgatcgagggccta
tctagggtgaagaggtgtactgatgaaggacgagcactcatgtcgctcgatctccaggtt
ctaataaatggcctaaagcattttgtcacaatcgatgtacagccaaaattgcatatagtg
gaaactttcatcaaggcgtactaccttccagaaaccgaatatgtccactggtcgcgtgct
catccggaatatagcaagagtcaaatagtggggcttatcaacctcgtcgcgacaatgaag
ggctggaaaagaaaaaccaggttagagatcttagagaagatagaatga
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integrated database retrieval system
