Salvia hispanica (chia): 125214706
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Entry
125214706 CDS
T09851
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
shis
Salvia hispanica (chia)
Pathway
shis03030
DNA replication
shis03420
Nucleotide excision repair
shis03430
Mismatch repair
shis03440
Homologous recombination
shis03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125214706
03420 Nucleotide excision repair
125214706
03430 Mismatch repair
125214706
03440 Homologous recombination
125214706
03460 Fanconi anemia pathway
125214706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shis03000
]
125214706
03032 DNA replication proteins [BR:
shis03032
]
125214706
03400 DNA repair and recombination proteins [BR:
shis03400
]
125214706
Transcription factors [BR:
shis03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
125214706
DNA replication proteins [BR:
shis03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
125214706
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
125214706
MMR (mismatch excision repair)
125214706
DSBR (double strand breaks repair)
HR (homologous recombination)
125214706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
Rhabdo_glycop_CD
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
125214706
NCBI-ProteinID:
XP_047971793
LinkDB
All DBs
Position
3:complement(25611165..25614449)
Genome browser
AA seq
624 aa
AA seq
DB search
MAKSVTPNAVSVILANPCPDSSSDFPEIIVQVLDLKATGNKYMFMASDGKMKVRALLQST
LASEVISGNIQNLGLIRVLDYTLNDIPTKKEKFLIVSKCDAESPALEAEYKVEVKVEGSG
TDLKPNQAMDVDVKTISAGILLKPNQEVMAKSAAQIVNDQHGNMAPAARMSMTRQVHPLA
SLNPYQGNWTIKVRVTGKGNMRSYRNARGEGCVFNVELTDEDGTQIQATMFNDAAKKFFD
TFQMGKVYFISKGTLKLANKQFKTVENDYEMTLNENSEVEEDNNEATFLPETKFSFTPID
ELGPYVNGRELVDVIGVVQSVSPTMSIRRKSNNETIPKRDIVIADETKKTVVVSLWNDLA
TSFGQELLDMADKSPVVAMKSLKVGEFQGVSLSALSKSIMVVDPDMPEAKKLRFWYDSEG
KDTSLAAIGPSPSNRNGARSMYSDRVSLSHITSNPSLGEDKPAYFSIKAYISAIKPDQAM
WYRACKTCSKKVTEAVGSGYWCEGCQKNEDVCSLRYIMAVKVSDASGEAFISVFNDQADK
MIGCTADELNEIKLHDGEASYQKKLKEATWVPHLFRISVTTNEYNNEKRQRITARAVAPI
DYATESKYLVEDMTKIKISKNLLN
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggctaaatcggtaaccccaaatgctgtatcagttattctggcaaatccatgcccagat
tcttcctctgatttcccggaaatcattgtacaagtcctcgatctcaaggccacaggcaac
aaatacatgtttatggcgagtgatggcaaaatgaaggtgagggctttgttgcagtcaact
ctagcgtctgaagtgatatctggaaacattcagaatttggggctcattcgtgttcttgat
tacactctcaatgatatcccaacgaagaaggaaaagttcttgattgtgtccaagtgtgat
gctgagtcgcctgcgcttgaggctgagtataaggtcgaggtgaaggttgagggtagtggg
actgatttgaaaccgaaccaggcaatggatgttgatgtgaaaactatatctgctggtatt
ctgttgaagccaaaccaggaagttatggctaaatctgctgctcaaattgttaatgatcag
catggaaatatggcgccagctgcacgaatgtcaatgacacgtcaagtccatccacttgct
tctttgaatccttatcaaggaaactggaccattaaagtccgggttacaggaaagggaaac
atgcggtcttacaggaatgctaggggagaaggctgtgtattcaatgtagagttgacagat
gaagatggcactcaaatacaagcaacgatgtttaatgatgctgcaaagaaattctttgat
acgtttcagatggggaaggtttacttcatatcgaagggaaccttgaaattagcaaacaag
caattcaaaactgtagaaaatgattatgagatgaccttaaatgaaaattcggaagtggag
gaagacaacaatgaggcaacctttcttcctgaaacaaaattcagttttactccaattgat
gagttaggtccatatgtcaatggaagggagcttgttgatgttattggcgtggttcagagt
gtgtctcctacaatgagtattagacggaagagcaacaatgagactatcccaaagcgtgat
atagtcattgctgatgagacgaagaaaactgtggtggtgtctctatggaacgatcttgcc
acgagctttgggcaggaacttcttgatatggctgataaatctcctgtagttgcgatgaaa
tctcttaaagttggtgaatttcaaggtgtatcattatcagcactgagtaaaagcattatg
gtagtcgaccctgacatgccagaagccaaaaagttgagattttggtatgattctgaaggc
aaagacacttctttggctgctattggaccaagcccatccaacagaaatggagcacgttcc
atgtactctgacagagtttccttatctcatatcaccagtaacccttccttgggagaggac
aagcctgcatacttctccatcaaagcatacatcagtgccatcaaacccgatcaagcaatg
tggtaccgtgcttgcaagacatgcagcaagaaggttactgaagctgtaggctctggctat
tggtgcgaaggatgccagaagaatgaagatgtctgcagtttaagatacataatggcagta
aaggtctctgatgcaagtggtgaagcatttatctcagttttcaatgatcaagcagataaa
atgattggatgcacggctgatgaactaaacgagataaagcttcatgatggagaagctagt
tatcagaagaaattaaaggaggcaacatgggttcctcaccttttccgcatcagtgtcact
acaaatgagtacaacaatgagaagagacagaggataacagccagggctgttgctccaatt
gattatgcaactgaatccaagtatctggttgaagacatgacaaagatcaaaatatctaag
aatctgcttaattga
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