KEGG   Salvia hispanica (chia): 125214758
Entry
125214758         CDS       T09851                                 
Name
(RefSeq) splicing factor U2af small subunit B-like
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
shis  Salvia hispanica (chia)
Pathway
shis03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125214758
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:shis03041]
    125214758
Spliceosome [BR:shis03041]
 Complex A
  U2 snRNP components
   U2 related factors
    125214758
 Complex B
    125214758
SSDB
Motif
Pfam: zf-CCCH RRM_1 Torus zf_CCCH_4 Autophagy_act_C zf-CCCH_4
Other DBs
NCBI-GeneID: 125214758
NCBI-ProteinID: XP_047971853
LinkDB
Position
3:11184726..11187944
AA seq 312 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP
GVDAQGQPIDPKKMQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEE
HAANALQNLTGRFYAGRPIIVDFSPVTDFREATCRQYEEDACNRGGYCNFMHLKRINREL
RHQLFGRRRSRHSRSRSRSPYRHRSYDDRSHESRSHSRRYDDHDRHESRSRRRKSTSPRS
RRGRSRSPGGRRNRSPVREGSEERRAKIAQWNREKEETERSGNKANAGDEDSRAKNDHSG
NIDNGGHNEPTQ
NT seq 939 nt   +upstreamnt  +downstreamnt
atggcggagcacttggcgtcaattttcggtacagagaaggaccgagttaactgcccattc
tacttcaagatcggcgcgtgcaggcacggcgaccgctgctcccgcctccacaccaagccg
agcatcagccccacgatccttctttccaacatgtaccagcgccccgacatgattactcct
ggcgtcgacgctcagggccagccgatcgaccccaaaaaaatgcaggaacacttcgaggac
ttttatgaagatttatttgaggagctaaacaaatacggagagattgaaagcttgaatgtt
tgtgacaatttagctgatcatatggttggcaatgtttatgtccaatttagggaggaagag
catgctgctaatgctcttcaaaacctgactgggcggttctatgcaggacgccccatcatt
gttgatttctccccagtgactgattttcgtgaagccacctgtaggcagtatgaggaggac
gcatgtaaccgtggtggctactgtaacttcatgcatctgaaaaggattaacagggagttg
aggcaccaattatttgggaggcgtaggagtagacacagccgtagcaggagcaggagtccc
tatcggcaccgtagctatgatgaccgctcacatgagagtcggagtcacagcagaaggtat
gatgaccacgatcgccatgaaagtcgaagcaggaggcgcaagagcacaagtccaagaagt
aggaggggtagaagccgaagtccaggtggcaggaggaatcgtagtcctgttagggaaggt
agtgaagaaagacgtgctaaaattgcacagtggaatagggagaaggaagaaacagaacgt
tctggcaacaaggcaaatgctggtgatgaggatagcagggctaaaaatgaccactctgga
aatatagataacggaggacacaatgaaccgacacagtag

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